Development and mapping of SSR markers in foxtail millet, a new model plant in panicoid grass and genetic analysis of wild population
| Project/Area Number |
25450501
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| Research Category |
Grant-in-Aid for Scientific Research (C)
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| Allocation Type | Multi-year Fund |
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| Section | 一般 |
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| Research Field |
Environmental agriculture(including landscape science)
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| Research Institution | Prefectural University of Hiroshima |
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Principal Investigator |
Fukunaga Kenji 県立広島大学, 生命環境学部, 教授 (50435533)
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| Co-Investigator(Kenkyū-buntansha) |
OHSAKO Takanori 京都府立大学, 生命環境科学研究科, 講師 (80363969)
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| Project Period (FY) |
2013-04-01 – 2016-03-31
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| Project Status |
Completed (Fiscal Year 2015)
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| Budget Amount *help |
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
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| Keywords | アワ / SSRマーカー / 多型 / 連鎖地図 / 組換え近交系 / 遺伝資源 / ゲノムワイドインデルマーカー / ハマエノコロ / Setaria italica / ゲノムワイド・インデルマーカー / ゲノム / 系統解析 / SSR / エノコログサ / DNAマーカー / 集団構造解析 / ゲノムシークエンス / 遺伝的多型 |
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| Outline of Final Research Achievements |
Recently foxtail millet became a model plant of panicoid grass species and its genome sequence has been determined. For further studies, development of DNA markers is essential. In this study, we developed genome-wide SSR markers and constructed a genetic linkage map between a Japanese landrace and a Taiwanese landrace and we also investigated degree of polymorphism of SSR markers between world-wide landraces. We also carried out a population genetic analysis of coastal ecotypes of green foxtail (wild ancestor of foxtail millet). We also developed genome-wide indel markers based on genome sequences.
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Report
(4 results)
Research Products
(10 results)
