• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Identification of high risk lineages that contain Stx2 high producing strains in enterohaemorrhagic Escherichia coli

Research Project

Project/Area Number 25460542
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bacteriology (including mycology)
Research InstitutionKyushu University (2015)
University of Miyazaki (2013-2014)

Principal Investigator

Yoshitoshi Ogura  九州大学, 医学(系)研究科(研究院), 准教授 (40363585)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords腸管出血性大腸菌 / 志賀毒素 / O157 / ファージ / ゲノム / non-O157 EHEC
Outline of Final Research Achievements

Enterohemorrhagic E. coli (EHEC) causes diarrhea and hemorrhagic colitis with life-threatening complications, such as hemolytic uremic syndrome. Their major virulence factor is Shiga toxin (Stx), which is encoded by bacteriophages. Of the two types of Stx, the production of Stx2, particularly that of Stx2a (a subtype of Stx2), is a major risk factor for severe EHEC infections, but the Stx2 production level is highly variable between strains. Here, we define four major subtypes of Stx2a-encoding phages according to their genomic structure. The subtypes are correlated with Stx2a titers produced by the host O157 strains, suggesting a critical role of the phage subtype in determining the Stx2a production level. To identify high risk EHEC lineage, we performed genome sequence, high-resolution phylogenetic analysis and determination of Stx2 production of 300, 50, and 50 strains of O157, O145 and O121, respectively. By this analysis, we identified 3 high risk O157 lineages.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (16 results)

All 2016 2015 2014

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 5 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results)

  • [Journal Article] Genetic relatedness and virulence properties of enteropathogenic Escherichia coli strains of serotype O119:H6 expressing localized adherence or localized and aggregative adherence-like patterns on HeLa cells.2016

    • Author(s)
      Garcia BG, Ooka T, Gotoh Y, Vieira MA, Yamamoto D, Ogura Y, Girão DM, Sampaio SC, Melo AB, Irino K, Hayashi T, Gomes TA.
    • Journal Title

      Int J Med Microbiol.

      Volume: 27 Issue: 3 Pages: 152-164

    • DOI

      10.1016/j.ijmm.2016.02.008

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC.2016

    • Author(s)
      Fakih I, Thiry D, Duprez JN, Saulmont M, Iguchi A, Pirard D, Jouant L, Daube G, Ogura Y, Hayashi T, Taminiau B, Mainil JG.
    • Journal Title

      Vet Microbiol.

      Volume: 23 Pages: 16-22

    • DOI

      10.1016/j.vetmic.2016.02.017

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Emergence of a Multidrug-Resistant Shiga Toxin-Producing Enterotoxigenic Escherichia coli Lineage in Diseased Swine in Japan.2016

    • Author(s)
      Kusumoto M, Hikoda Y, Fujii Y, Murata M, Miyoshi H, Ogura Y, Gotoh Y, Iwata T, Hayashi T, Akiba M.
    • Journal Title

      J Clin Microbiol.

      Volume: 54 Issue: 4 Pages: 1074-81

    • DOI

      10.1128/jcm.03141-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage.2015

    • Author(s)
      Yoshitoshi Ogura, Shakhinur Islam Mondal, Md Rakibul Islam, Toshihiro Mako, Kokichi Arisawa, Keisuke Katsura, Tadasuke Ooka, Yasuhiro Gotoh, Kazunori Murase, Makoto Ohnishi, and Tetsuya Hayashi
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 16663-16663

    • DOI

      10.1038/srep16663

    • NAID

      120006875675

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster.2015

    • Author(s)
      Atsushi Iguchi, Sunao Iyoda, Taisei Kikuchi, Yoshitoshi Ogura, Keisuke Katsura, Makoto Ohnishi, Tetsuya Hayashi, Nicholas R Thomson
    • Journal Title

      DNA Res

      Volume: 22 Issue: 1 Pages: 101-107

    • DOI

      10.1093/dnares/dsu043

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.2014

    • Author(s)
      R. Kajitani, K. Toshimoto, H. Noguchi, A. Toyoda, Y. Ogura, M. Okuno, M. Yabana, M. Harada, E. Nagayasu, H. Maruyama, Y. Kohara, A. Fujiyama, T. Hayashi and T.Itoh
    • Journal Title

      Genome Research,

      Volume: 24 Issue: 8 Pages: 1384-1384

    • DOI

      10.1101/gr.170720.113

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli.2014

    • Author(s)
      Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K, Ohnishi M, Sekine Y.
    • Journal Title

      J Gen Appl Microbiol.

      Volume: 60 Pages: 44-50

    • NAID

      130004802264

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phylogenetic Clades 6 and 8 of Enterohemorrhagic Escherichia coli O157:H7 With Particular stx Subtypes are More Frequently Found in Isolates From Hemolytic Uremic Syndrome Patients Than From Asymptomatic Carriers.2014

    • Author(s)
      Iyoda S, Manning SD, Seto K, Kimata K, Isobe J, Etoh Y, Ichihara S, Migita Y, Ogata K, Honda M, Kubota T, Kawano K, Matsumoto K, Kudaka J, Asai N, Yabata J, Tominaga K, Terajima J, Morita-Ishihara T, Izumiya H, Ogura Y, et al.
    • Journal Title

      Open Forum Infect Dis.

      Volume: 12 Issue: 2

    • DOI

      10.1093/ofid/ofu061

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 腸管出血性大腸菌O157のStx2高産生性に関わる遺伝的要因の解明2016

    • Author(s)
      小椋義俊、西田留梨子、中島瑶子、片平雄之、後藤恭宏、大西真、林哲也
    • Organizer
      第89回日本細菌学会総会
    • Place of Presentation
      大阪国際交流センター
    • Year and Date
      2016-03-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] WGS-based phylogenetic analyses of O157 enterohaemorrhagic Escherichia coli (EHEC) strains and bovine- and human-associated E. coli strains to elucidate the evolutionary pathway of EHEC2016

    • Author(s)
      Yoshitoshi Ogura
    • Organizer
      International Symposium on Genome Microbiology
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2016-03-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Identification of high Stx2-producing Escherichia coli O157 clades by WGS-based phylogenetic analysis2016

    • Author(s)
      Yoshitoshi Ogura, Jun Yatsuyanagi, Kazuko Seto, Hiroshi Narimatsu, Kikuyo Ogata, Keiko Kimata, Junko Isobe, Eriko Maeda, Yoshiki Etoh, Mitsuhiro Kameyama, Shakhinur Islam Mondal, Md Rakibul Islam, Tadasuke Ooka, Yasuhiro Gotoh, Kazunori Murase, Makoto Ohnishi, and Tetsuya Hayashi
    • Organizer
      SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease
    • Place of Presentation
      Shiga Lake Hotel, Nagano, Japan
    • Year and Date
      2016-02-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ラムダファージの自然環境中における生存戦略と大腸菌との共進化2015

    • Author(s)
      小椋義俊、林哲也
    • Organizer
      第88回日本細菌学会
    • Place of Presentation
      長良川国際会議場(岐阜県岐阜市)
    • Year and Date
      2015-03-26 – 2015-03-28
    • Related Report
      2014 Research-status Report
  • [Presentation] ヒトおよびウシ由来腸管出血性大腸菌O26のファイロゲノミクス解析2014

    • Author(s)
      小椋義俊、桂啓介、伊藤武彦、Mainil Jacques 、吉野修司、磯部順子、勢戸和子、江藤良樹、楠本正博、黒木真理子、木全恵子、前田詠里子、秋庭正人、後藤恭宏、大岡唯祐、林哲也
    • Organizer
      環境微生物学会合同大会
    • Place of Presentation
      アクトシティ浜松コングレスセンター(静岡県浜松市)
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] 微生物ゲノム研究、この13年間を振り返る(未来開拓事業、ゲノム特定、ゲノム支援を経験して)2014

    • Author(s)
      小椋義俊
    • Organizer
      第8回日本ゲノム微生物学会若手の会
    • Place of Presentation
      ろうきん研修所富士センター(静岡県駿東郡小山町)
    • Year and Date
      2014-09-28 – 2014-09-29
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.2014

    • Author(s)
      Y. Ogura, T. Hayashi
    • Organizer
      第87回日本細菌学会総会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ファイロゲノミクスによる腸管出血性大腸菌の優勢系統群および志賀毒素高産生性系統群の同定2014

    • Author(s)
      小椋義俊、桂啓介、伊藤武彦、Mainil Jacques、吉野修司、磯部順子、勢戸和子、江藤良樹、富永潔、緒方喜久代、楠本正博、黒木真理子、木全恵子、前田詠里子、亀山光博、成松浩志、秋庭正人、矢端順子、後藤恭宏、大岡唯祐、林哲也
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi