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Comprehensive analysis of the red blood cell membrane disorders using next-generation sequencer

Research Project

Project/Area Number 25460686
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Laboratory medicine
Research InstitutionYamaguchi University

Principal Investigator

YAMASHIRO Yasuhiro  山口大学, 医学(系)研究科(研究院), 准教授 (50243671)

Co-Investigator(Kenkyū-buntansha) TANAKA Tatehiko  山口大学, 大学院医学系研究科, 准教授 (20144925)
Research Collaborator HATTORI Yukio  
NITTA Takenori  
SHIMIZU Nobuhiro  
Mella Ferania  
Chris Adhiyanto  
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2013: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords赤血球膜タンパク異常症 / 次世代シーケンサー / 球状赤血球症 / アンキリン / スペクトリン / Ion PGM / 遺伝子解析 / 赤血球膜タンパク / 遺伝子異常 / 網羅的解析
Outline of Final Research Achievements

Genetic analysis of red blood cell (RBC) membrane protein disorders were carried out using next generation sequencing. Solid5500 gave many polymorphisms and mutations, while determination of disease-related genes or a large deletion was difficult. Using Ion PGM twenty kinds of gene of RBC membrane protein were analyzed for 6 patients, and a novel ankyrin gene mutation was found in four. One of them also had an α-spectrin mutation, which may have deteriorated the clinical manifestation. Other two are under search for gene deletion. On genetic analysis of compound heterozygote or gene deletion, like RBC membrane protein disorders, Ion PGM that focuses on the related gene is effective.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (4 results)

All 2015 2014

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 2 results) Presentation (2 results)

  • [Journal Article] A new Kruppel-like factor 1 mutation (c.947G > A or p.C316Y) in humans causes β-thalassemia minor.2015

    • Author(s)
      Nitta T, Kawano F, Yamashiro Y, Takagi F, Murata T, Tanaka T, Ferania M, Adhiyanto C, Hattori Y
    • Journal Title

      Hemoglobin

      Volume: 39(2) Issue: 2 Pages: 121-126

    • DOI

      10.3109/03630269.2015.1008702

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A New Kruppel-Like Factor 1 Mutation (c.947G>A or p.C316Y) in Humans Causes β-Thalassemia Minor.2015

    • Author(s)
      Nitta T, Kawano F, Yamashiro Y, Takagi F, Murata T, Tanaka T, Ferania M, Adhiyanto C, Hattori Y
    • Journal Title

      Hemoglobin

      Volume: 39(2) Pages: 121-6

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Comprehensive analysis of red cell membrane proteins by the next-generation sequencer2015

    • Author(s)
      Mori Kentaro, Yamashiro Yasuhiro, Hattori Yukio, Nitta Takenori, Kajiwara Ryosuke, Nakamori Yoshiki, Mella Ferania, Takagi Fumiya
    • Organizer
      日本血液学会
    • Place of Presentation
      石川県金沢市(ホテル金沢)
    • Year and Date
      2015-10-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] KLF1 gene mutation cause minor β-thalassemia.2014

    • Author(s)
      Nitta Takenori, Yamashiro Yasuhiro, Hattori Yukio, Mella Ferania, Shimizu Nobuhiro, Tanaka Tatehiko, Kawano Fumio.
    • Organizer
      日本血液学会
    • Place of Presentation
      大阪国際会議場(大阪市)
    • Year and Date
      2014-10-31
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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