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Molecular pathogenesis study for migraine through integrated genomics based on exome analysis

Research Project

Project/Area Number 25461270
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Neurology
Research InstitutionNational Center of Neurology and Psychiatry

Principal Investigator

Takahashi Yuji  国立研究開発法人国立精神・神経医療研究センター, 病院, 医長 (00372392)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords片麻痺性片頭痛 / エクソーム / 網膜色素変性症 / 電位依存性カルシウムチャネル / イオントランスポーター / 変異解析
Outline of Final Research Achievements

The purpose of this study is to identify causative genes for familial hemiplegic migraine through exome analysis and bioinformatics. Affected individuals of a pedigree with severe attacks of hemiplegic migraine complicated with retinitis pigmentosa were subjected to whole exome analysis. Narrowing-down of variants shared among affected individuals through bioinformatic analysis integrating gene expression data has led to the successful identification of three variants considered as candidates for the pathogenic mutation. In addition, 29 exomes have been conducted in this project, which led to the identification of mutations in known causative genes in two pedigrees. In the remaining 27 pedigrees, 2473 novel non-synonymous variants have been identified in total, among which 188 variants were shared among multiple pedigrees. Further accumulation of exome data should be necessary to identify causative genes through leveraging the variation data obtained in this study.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (3 results)

All 2015 2014 2013

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (2 results)

  • [Journal Article] Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.2014

    • Author(s)
      Doi K, Monjo T, Hoang PH, Yoshimura J, Yurino H, Mitsui J, Ishiura H, Takahashi Y, Ichikawa Y, Goto J, Tsuji S, Morishita S.
    • Journal Title

      Bioinformatics

      Volume: 30 Issue: 6 Pages: 815-822

    • DOI

      10.1093/bioinformatics/btt647

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 網膜色素変性症を伴う家族性片麻痺性片頭痛における病因遺伝子探索.2015

    • Author(s)
      高橋 祐二,滝澤 歩武,古澤 嘉彦,石浦 浩之,三井 純,森下 真一,辻 省次,村田 美穂
    • Organizer
      第43回日本頭痛学会総会
    • Place of Presentation
      東京
    • Year and Date
      2015-11-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Genetic epidemiological study on migraine and episodic ataxia in the Japanese population2013

    • Author(s)
      Yuji Takahashi, Hiroyuki Ishiura, Jun Goto and Shoji Tsuji
    • Organizer
      American Society of Human Genetics 63rd Annual Meeting
    • Place of Presentation
      Boston Convention & Exhibition Center, Boston, MA, USA
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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