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Study of a novel enzymatic group of dipeptidyl peptidases and their cellular localization

Research Project

Project/Area Number 25462894
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional basic dentistry
Research InstitutionNagasaki University

Principal Investigator

OHARA-NEMOTO Yuko  長崎大学, 医歯薬学総合研究科(歯学系), 准教授 (10164667)

Co-Investigator(Kenkyū-buntansha) NEMOTO Takayuki K.  長崎大学, 医歯薬学総合研究科(歯学系), 教授 (90164665)
KIMURA Shigenobu  岩手医科大学, 歯学部, 教授 (10177917)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsPorphyromonas gingivalis / ジペプチジルペプチダーゼ / アミノ酸代謝 / ペリプラズム / 歯周病 / ペプチダーゼ / 歯周病原性細菌 / 嫌気性菌 / 糖非発酵性細菌 / 口腔細菌 / 酵素
Outline of Final Research Achievements

We examined enzymatic activity and cellular localization of a group of dipeptidyl peptidases (DPP) in a periodontopathic bacterium, Porphyromonas gingivalis. This study revealed that DPP5, which had been discovered in fungi, was expressed in the bacterium, and that a novel peptidase, acylpeptidyl oligopeptidase (AOP), was identified. Ortholog search demonstrated wide spreading of the two exopeptidases from bacteria, archea to eukaryote. DPP5 cleaves X-Ala dipeptides from the N-terminus of oligopeptides and AOP liberates di- and tri-peptides from N-terminally blocked ones. Both peptidases were expressed in the periplasmic space of the bacterium. Consequently, we proposed that dipeptide-producing exopeptidases including DPP4, DPP5, DPP7, DPP11 and AOP are crucial for the growth and pathogenicity of P. gingivalis.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (27 results)

All 2016 2015 2014 2013 Other

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (15 results) (of which Int'l Joint Research: 3 results,  Invited: 2 results) Remarks (5 results)

  • [Journal Article] Porphyromonas gingivalis exopeptidases as crucial factors for its amino acid metabolism2016

    • Author(s)
      Nemoto, T.K., Ohara-Nemoto, Y.
    • Journal Title

      Jap. Dent. Sci. Rev.

      Volume: 52 Issue: 1 Pages: 22-29

    • DOI

      10.1016/j.jdsr.2015.08.002

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Identification and characterization of prokaryotic dipeptidyl-peptidase 5 from Porphyromonas gingivalis.2014

    • Author(s)
      Ohara-Nemoto Y, Rouf SMA, Naito M, Yanase A, Tetsuo F, Ono T, Kobayakawa T, Shimoyama Y, Kimura S, Nakayama K, Saiki K, Konishi K, Nemoto TK.
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 9 Pages: 5438-5448

    • DOI

      10.1074/jbc.m113.527333

    • NAID

      120006986777

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of dipeptidyl-peptidase (DPP)5 and DPP7 in Porphyromonas endodontalis, distinct from those in Porphyromonas gingivalis.2014

    • Author(s)
      Nishimata H, Ohara-Nemoto Y, Baba TT, Hoshino T, Fujiwara T, Shimoyama Y, Kimura S, Nemoto TK.
    • Journal Title

      PLoS One

      Volume: 9 Issue: 12 Pages: 1-15

    • DOI

      10.1371/journal.pone.0114221

    • NAID

      120006986295

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] In vitro processing of glutamyl endopeptidase proenzymes from Enterococcus faecalis and importance of N-terminal residue in enzyme catalysis.2013

    • Author(s)
      Rouf, S. M., Ohara-Nemoto, Y., Ono, T., Shimoyama, Y., Kimura, S. and Nemoto, T. K.
    • Journal Title

      Adv. Biochem.

      Volume: 1 Issue: 5 Pages: 73-80

    • DOI

      10.11648/j.ab.20130105.11

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phenylalanine 664 of dipeptidyl peptidase (DPP) 7 and Phenylalanine 671 of DPP11 mediate preference for P2-position hydrophobic residues of a substrate.2013

    • Author(s)
      Rouf, S. M., Ohara-Nemoto, Y., Ono, T., Shimoyama, Y., Kimura, S. and Nemoto, T. K.
    • Journal Title

      FEBS Open Bio.

      Volume: 3 Issue: 1 Pages: 177-183

    • DOI

      10.1016/j.fob.2013.03.004

    • NAID

      120006985739

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Measurement of protease activity of exfoliative toxin A using synthetic peptidyl substrates and correlation between in vivo and in vitro activities.2013

    • Author(s)
      Tachi, M. T., Ohara-Nemoto, Y., Baba, T.T., Kobayakawa, T., Fujita, S., Ikeda, T., Ayuse, T., Oi, K., Nemoto, T.K.
    • Journal Title

      Acta Med. Nagasaki.

      Volume: 58 Pages: 41-48

    • NAID

      110009614178

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Involvement of geranylgeranylation of Rho and Rac GTPases in adipogenic and RANKL expression, which was inhibited by simvastatin2013

    • Author(s)
      Baba TT, Ohara-Nemoto Y, Miyazaki T, and Nemoto TK
    • Journal Title

      Cell Biochem Funct.

      Volume: 28 Issue: 8 Pages: 652-659

    • DOI

      10.1002/cbf.2951

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Oral bacteria and systemic diseases: Periodontopathic bacteria and type 2 diabetes mellitus2015

    • Author(s)
      Ohara-Nemoto, Y., and Nemoto, T.K.
    • Organizer
      1st Partnership Symposium of Nagasaki and Islamic Universities
    • Place of Presentation
      Kushtia (Bangladesh)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Identification of exopeptidases expressed in periodontopathic bacteria, Porphyromonas gingivalis and Porphyromonas endodontalis2015

    • Author(s)
      Nemoto, T.K., and Ohara-Nemoto, Y.
    • Organizer
      1st Partnership Symposium of Nagasaki and Islamic Universities
    • Place of Presentation
      Kushtia (Bangladesh)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] アシルオリゴペプチジルペプチダーゼ活性を有する歯周病原性細菌の新規ペプチダーゼ2015

    • Author(s)
      根本孝幸,根本優子
    • Organizer
      第57回歯科基礎医学会学術大会・総会
    • Place of Presentation
      朱鷺メッセ( 新潟市)
    • Year and Date
      2015-09-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] 非RI蛍光試薬によるPorphyromonas gingivalisのアミノ酸とジペプチドの取り込みの評価2015

    • Author(s)
      小早川健,根本優子,馬場友巳,根本孝幸
    • Organizer
      第57回歯科基礎医学会学術大会・総会
    • Place of Presentation
      朱鷺メッセ( 新潟市)
    • Year and Date
      2015-09-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] Tannerella forsythia のジペプチジルペプチダーセ4の性状解析2015

    • Author(s)
      中里茉那美,下山佑,根本優子,根本孝幸,高橋晋平,石河太知,佐々木実,八重柏隆,木村重信
    • Organizer
      第57回歯科基礎医学会学術大会・総会
    • Place of Presentation
      朱鷺メッセ( 新潟市)
    • Year and Date
      2015-09-11
    • Related Report
      2015 Annual Research Report
  • [Presentation] 歯周病原性‘red complex species’のビルレンス因子としてのプロテアーゼ2015

    • Author(s)
      下山佑,中里茉那美,根本優子,根本孝幸,石河太知,八重柏隆,佐々木実,木村重信
    • Organizer
      第69回 日本細菌学会東北支部総会
    • Place of Presentation
      郡山ビッグア( 郡山市)
    • Year and Date
      2015-08-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Towards the structural basis of peptide binding to dipeptidyl peptidases of Porphyromonas sp.2015

    • Author(s)
      Bezerra, G. A., Ohara-Nemoto, Y., Nemoto, T.K., Djinovic-Carugo, K.
    • Organizer
      2015 Annual Meeting - American Crystallographic Association
    • Place of Presentation
      Philadelphia (USA)
    • Year and Date
      2015-07-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mechanism on oligomer-monomer transition of a novel oligopeptidase from periodontopathic bacterium.2014

    • Author(s)
      根本孝幸,小野俊雄,下山佑,木村重信,根本優子
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館・グランドプリンスホテル京都
    • Year and Date
      2014-10-15 – 2014-10-17
    • Related Report
      2014 Research-status Report
  • [Presentation] 歯周病原性細菌の新規オリゴペプチダーゼ:基質特異性と分子集合性2014

    • Author(s)
      根本孝幸,根本優子,小野俊雄,下山佑,木村重信
    • Organizer
      第56回歯科基礎医学会学術大会・総会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] SLPIによるPorphyromonas gingivalisに対する感染抑制作用2014

    • Author(s)
      下山佑,石河太知,根本優子,根本孝幸,佐々木実,木村重信
    • Organizer
      第56回歯科基礎医学会学術大会・総会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Identification and Characterization of Dipeptidyl-Peptidase V as a Member for Dipeptide Production in Porphyromonas gingivalis.2013

    • Author(s)
      根本孝幸,ラオフ シャーク ムハマド アブデュー,根本優子,下山佑,木村重信
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Porphyromonas endodontalisの発現するユニークなジペプチジルペプチダーゼ(DPP)VおよびDPP7.2013

    • Author(s)
      柳瀬絵美,根本優子,下山佑,木村重信,馬場友巳,根本孝幸
    • Organizer
      第55回歯科基礎医学会学術大会・総会
    • Place of Presentation
      岡山コンベンションセンター(岡山県岡山市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Towards the structural basis of peptide binding to dipeptidyl peptidase 11 of Porphyromonas gingivalis.2013

    • Author(s)
      Bezerra, G. A., Ohara-Nemoto, Y., Nemoto, T.K., Djinovic-Carugo, K.
    • Organizer
      Recent Advances in Macromolecular Crystallization
    • Place of Presentation
      Le Bischenberg Conference Centre (Strasbourg, France)
    • Related Report
      2013 Research-status Report
  • [Presentation] Dipeptide production in Porphyromonas gingivalis mediated by dipeptidyl peptidases and gingipains.2013

    • Author(s)
      Ohara-Nemoto, Y., Abdur-Rouf, S. M., Shimoyama, Y., Kimura, S., and Nemoto, T. K.
    • Organizer
      113rd General meeting of ASM
    • Place of Presentation
      The Colorado Convention Center (Denver, USA)
    • Related Report
      2013 Research-status Report
  • [Presentation] Distribution of Porphyromonas gingivalis fimA genotypes in the children’s plaques.2013

    • Author(s)
      Shioyama, Y., Ohara-Nemoto, Y., Kimura, M., Sasaki, M., Tanaka, M., and Kimura, S.
    • Organizer
      113rd General meeting of ASM
    • Place of Presentation
      The Colorado Convention Center (Denver, USA)
    • Related Report
      2013 Research-status Report
  • [Remarks] 原核生物で初めてジペプチジルペプチダーゼ5(DPP5)を発見

    • URL

      http://www.nagasaki-u.ac.jp/ja/about/info/science/science71.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 長崎大 歯周病細菌で原核生物では初のDPP5を発見

    • URL

      http://www.nagasaki-u.ac.jp/ja/about/info/science/science71.html

    • Related Report
      2014 Research-status Report
  • [Remarks] 原核生物で初めてジペプチジルペプチダーゼ5(DPP5)を発見

    • URL

      http://www.nagasaki-u.ac.jp/ja/about/info/science/science71.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 長崎大 歯周病細菌で原核生物では初のDPP5を発見

    • URL

      http://www.qlifepro.com/news/20140319/gum-disease-bacteria-found-in-prokaryotic-dpp5s-first.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 長崎大 歯周病細菌で原核生物では初のDPP5を発見 - QLifePro医療ニュース

    • URL

      http://buzz.news.yahoo.co.jp/article/7d8b598590aeb94d1a3e66b61b87fa6186aa632c/

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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