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A machine learning appraoch to data-driven discovery of drug molecules

Research Project

Project/Area Number 25540015
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Statistical science
Research InstitutionThe Institute of Statistical Mathematics

Principal Investigator

RYO Yoshida  統計数理研究所, モデリング研究系, 准教授 (70401263)

Co-Investigator(Kenkyū-buntansha) IBA Yukito  統計数理研究所, モデリング研究系, 教授 (30213200)
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords化学情報学 / 創薬 / 分子設計 / ベイズ統計 / カーネル法 / マルコフ連鎖モンテカルロ法
Outline of Final Research Achievements

The chemical space subject to pharmaceutical developments consists of 10~60 pharmaceutical candidates. Our challenge is to discover new compounds in the huge space that exhibit desired properties on various pharmacological activities, required to be a drug. The aim of this study is to create a new molecular design method by the integration of Bayesian and machine learning methods. Our approach is as follows: (a) we develop forward prediction models based on experimental data that predict the properties of a compound with the chemical structure, (ii) the backward prediction is derived by inverting the forward model according to the Bayes formula, and (iii) the backward model is used to generate new compounds with the chemical structures likely to achieve desired pharmacological activities. Under industry-academia partnerships, we are putting into practice the developed method in the area of resin and pigment chemistry in addition to pharmaceutical developments.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (5 results)

All 2015 2014 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results) (of which Invited: 4 results)

  • [Journal Article] Atom Environment Kernels on Molecules2014

    • Author(s)
      Hiroshi Yamashita, Tomoyuki Higuchi, Ryo Yoshida
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 未定 Issue: 5 Pages: 1289-1300

    • DOI

      10.1021/ci400403w

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed
  • [Presentation] ライフサイエンス分野におけるベイズ統計の先端応用2015

    • Author(s)
      吉田亮
    • Organizer
      バイオスーパーコンピューティング研究会 ウィンタースクール2015
    • Place of Presentation
      愛知県休暇村伊良湖
    • Year and Date
      2015-01-30 – 2015-01-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ライフサイエンスにおけるベイズ統計学の戦略的応用分野の開拓

    • Author(s)
      吉田亮
    • Organizer
      第一回腫瘍分子生物学・生命情報共同セミナー
    • Place of Presentation
      金沢大学
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ベイズ統計学入門:システムズバイオロジー、分子設計、バイオイメージングの応用例を中心に

    • Author(s)
      吉田亮
    • Organizer
      第23回大阪大学生命機能数理モデル検討会
    • Place of Presentation
      大阪大学免疫学フロンティア研究センター
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] ベイズ統計学とバイオサイエンスの協働

    • Author(s)
      吉田亮
    • Organizer
      JST・CREST「生命動態の理解と制御のための基盤技術の創出」第2回領域会議 産総研セミナー・数理デザイン道場
    • Place of Presentation
      日本科学未来館
    • Related Report
      2013 Research-status Report
    • Invited

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Published: 2014-07-25   Modified: 2019-07-29  

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