• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Detection of translational signal in RNAs

Research Project

Project/Area Number 25540129
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionTohoku University

Principal Investigator

YAMASHITA Riu  東北大学, 東北メディカル・メガバンク機構, 准教授 (10401259)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords翻訳制御 / non-coding RNA / データベース / 翻訳調節 / short peptide / 翻訳 / Ribosomal profiling / モチーフ / 国際情報交換
Outline of Final Research Achievements

There is not clear definition of non-coding RNAs so far. Here I detected potential coding RNA from non-coding RNAs. Some of them were detected as short peptides by Mass spectrometry analysis. Moreover, one of them shows cell-cycle accelation by overexpression of the smll peptide. I made the databse for potetial small peptide, and it is availble on web site.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (9 results)

All 2015 2014 2013 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results) Presentation (4 results) Remarks (1 results)

  • [Journal Article] DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.2015

    • Author(s)
      Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K.
    • Journal Title

      Nucleic Acids Res.

      Volume: 43 Issue: D1 Pages: 1-5

    • DOI

      10.1093/nar/gku1080

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Babesia bovis gene and promoter model: an update from full-length EST analysis.2014

    • Author(s)
      Yamagishi J, Wakaguri H, Yokoyama N, Yamashita R, Suzuki Y, Xuan X, Igarashi I.
    • Journal Title

      BMC Genomics

      Volume: 15 Issue: 1 Pages: 678-678

    • DOI

      10.1186/1471-2164-15-678

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] BioHackathon series in 2011 and 2012 : penetration of ontology and linked data in life science domains2014

    • Author(s)
      Katayama T, Komiyama Y, et al.
    • Journal Title

      Journal of Biomedical Semantics

      Volume: 5 Issue: 1 Pages: 5-5

    • DOI

      10.1186/2041-1480-5-5

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] MicroRNA-126-mediated control of cell fate in B-cell myeloid progenitors as a potential alternative to transcriptional factors.2013

    • Author(s)
      Okuyama K, Ikawa T, Gentner B, Hozumi K, Harnprasopwat R, Lu J, Yamashita R, Ha D, Toyoshima T, Chanda B, Kawamata T, Yokoyama K, Wang S, Ando K, Lodish HF, Tojo A, Kawamoto H, Kotani A
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 110 Issue: 33 Pages: 13410-13415

    • DOI

      10.1073/pnas.1220710110

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] transcriptional research to translational research2015

    • Author(s)
      Riu Yamashita et al
    • Organizer
      第一回translational research meeting
    • Place of Presentation
      東京都港区 東京大学医科学研究所
    • Year and Date
      2015-03-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 潜在的に翻訳されるRNAとそのデータベース2014

    • Author(s)
      山下理宇
    • Organizer
      SIG-BIO研究会
    • Place of Presentation
      北陸先端大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Potential translation in RNA sequences2013

    • Author(s)
      Riu yamashita
    • Organizer
      生命医薬情報学連合大会
    • Place of Presentation
      タワーホール船堀
    • Related Report
      2013 Research-status Report
  • [Presentation] 翻訳に着目したnon-coding RNAとcoding RNA2013

    • Author(s)
      山下理宇
    • Organizer
      NGS現場の会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Research-status Report
  • [Remarks]

    • URL

      http://dbtss.hgc.jp

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi