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Establishing a transcriptional regulation system of the p21 gene by artificial transcription factors using genomic editing technique

Research Project

Project/Area Number 25550029
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Risk sciences of radiation and chemicals
Research InstitutionOsaka University

Principal Investigator

FUJIWARA Tomoko  大阪大学, 医学(系)研究科(研究院), 助教 (70402922)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsメダカ / ゲノム編集技術 / 転写制御 / p21 / 放射線 / 損傷応答
Outline of Final Research Achievements

Recently genome editing techniques such as TALENs and CRISPR has been reported as attractive novel gene targeting method. Both methods include sequence specific DNA binding, and subsequent introduction of DNA double strand break in vicinity of the binding site. In this study, we tried to establish a transcriptional regulation system in Medaka. We generated the Artificial Transcription Factor (ATF) by replacing the DNA cleavage activity with the transcriptional regulation activity. For this purpose we established in vitro transcription regulation system in β-actin and p21 genes. guideRNA were designed at several positions of upstream in each gene. These gRNA and nuclease-null Cas9 construct which tethering transcriptional activation domain include were introduced in medaka cells, and these transcriptional activation activity were detected as luciferase reporter activity. We detected gRNA mediated transcriptional activity in β-actin and p21 gene by this ATF system.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (28 results)

All 2015 2014 2013

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 3 results) Presentation (22 results)

  • [Journal Article] Loss of follicle-stimulating hormone receptor function causes masculinization and sippression of ovarian development in genetically female medaka.2014

    • Author(s)
      Murozumi N, Nakashima R, Hirai T, Kamei Y, Ishikawa-Fujiwara T, Todo T, Kitano T.
    • Journal Title

      Endocrinology

      Volume: 155(8) Issue: 8 Pages: 3136-45

    • DOI

      10.1210/en.2013-2060

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Cryptochrome/Photolyase Family in aquatic organisms.2014

    • Author(s)
      Oliveri P, et al.
    • Journal Title

      Mar Genomics

      Volume: pii: S1874-7787(14) Pages: 22-1

    • DOI

      10.1016/j.margen.2014.02.001

    • Related Report
      2014 Annual Research Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Human papillomavirus and p53 mutations in head and neck squamous cell carcinoma among Japanese population.2014

    • Author(s)
      Maruyama H, Yasui T, Ishikawa-Fujiwara T, Morii E, Yamamoto Y, Yoshii T, Takenaka Y, Nakahara S, Todo T, Hongyo T, Inohara H.
    • Journal Title

      Cancer Sci.

      Volume: 105(4) Issue: 4 Pages: 409-417

    • DOI

      10.1111/cas.12369

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] p53-Dependent suppression of genome instability in germ cells.2014

    • Author(s)
      Otozai S, Ishikawa-Fujiwara T, Oda S, Kamei Y, Ryo H, Sato A, Nomura T, Mitani H, Tsujimura T, Inohara H, Todo T.
    • Journal Title

      Mutat Res,

      Volume: 760 Pages: 24-32

    • DOI

      10.1016/j.mrfmmm.2013.12.004

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Circadian and Circalunar Clock Interactions in a Marine Annelid.2013

    • Author(s)
      Zantke J, et al.
    • Journal Title

      Cell Rep.

      Volume: 5(1) Issue: 1 Pages: 99-113

    • DOI

      10.1016/j.celrep.2013.08.031

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish.2013

    • Author(s)
      Ishikawa T, Okada T, Ishikawa-Fujiwara T, Todo T, Kamei Y, Shigenobu S, Tanaka M, Saito TL, Yoshimura J, Morishita S, Toyoda A, Sakaki Y, Taniguchi Y, Takeda S, Mori K.
    • Journal Title

      Mol Biol Cell

      Volume: 24(9) Issue: 9 Pages: 1387-1395

    • DOI

      10.1091/mbc.e12-11-0830

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Molecular mechanism of mutagenesis in Medaka fish2015

    • Author(s)
      Tomoko Ishikawa-Fujiwara, Yoshihiro Fujikawa, Eri Shiraishi, Takeshi Todo
    • Organizer
      International Symposium on Genome Science 2015
    • Place of Presentation
      東京・一橋講堂
    • Year and Date
      2015-01-20 – 2015-01-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] CRISPR/Cas9システムによるメダカ光回復酵素遺伝子変異体の樹立2014

    • Author(s)
      藤原(石川) 智子、藤川 芳宏、藤堂 剛
    • Organizer
      第57回日本放射線影響学会
    • Place of Presentation
      鹿児島・鹿児島県民交流センター
    • Year and Date
      2014-10-01 – 2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] メダカ生殖細胞における放射線誘発遺伝的不安定性の解析2014

    • Author(s)
      藤原(石川) 智子、音在 信治、尾田 正二、三谷 啓志、猪原 秀典、藤堂 剛
    • Organizer
      第57回日本放射線影響学会
    • Place of Presentation
      鹿児島・鹿児島県民交流センター
    • Year and Date
      2014-10-01 – 2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] TALENs によるメダカにおける TLS ポリメラーゼ遺伝子群変異体の網羅的作製2014

    • Author(s)
      藤川 芳宏、藤原(石川) 智子、佐久間 哲史、山本 卓、藤堂 剛
    • Organizer
      第57回日本放射線影響学会
    • Place of Presentation
      鹿児島・鹿児島県民交流センター
    • Year and Date
      2014-10-01 – 2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] Functional conversion of (6-4) photolyase and CPD photolyase2014

    • Author(s)
      Daichi Yamada, Junpei Yamamoto, Tomoko Ishikawa, Tomohiro Suzuki, I M. Mahaputra Wijaya, Tatsuya Iwata, Elizabeth D. Getzoff, Takeshi Todo, Shigenori Iwai and Hideki Kandori
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道・札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ゲノム編集技術:CRISPR/Cas9システムによるメダカ光回復酵素遺伝子変異体の樹立2014

    • Author(s)
      藤原(石川) 智子、藤川 芳宏、藤堂 剛
    • Organizer
      第18回日本光生物学協会年会
    • Place of Presentation
      大阪・大阪市立大学学術総合センター
    • Year and Date
      2014-08-22 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] TALENsを利用した遺伝子破壊によるメダカの損傷乗り越えDNA合成ポリメラーゼ遺伝子変異体の作成2014

    • Author(s)
      藤川 芳宏、藤原(石川) 智子、佐久間 哲史、山本 卓、藤堂 剛
    • Organizer
      第18回日本光生物学協会年会
    • Place of Presentation
      大阪・大阪市立大学学術総合センター
    • Year and Date
      2014-08-22 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] 変異導入による(6-4)光回復酵素からCPD光回復酵素への機能転換2014

    • Author(s)
      山田 大智、山元 淳平、.I. M. Mahaputra Wijaya、岩田 達也、鈴木智大、石川 智子、Elizabeth D. Getzoff、藤堂 剛、岩井 成憲、神取 秀樹
    • Organizer
      第18回日本光生物学協会年会
    • Place of Presentation
      大阪・大阪市立大学学術総合センター
    • Year and Date
      2014-08-22 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] CRISPR/Cas9システムによるメダカ光回復酵素遺伝子変異体の樹立2014

    • Author(s)
      藤原(石川) 智子、 藤川 芳宏、 藤堂 剛
    • Organizer
      第36回光医学光生物学会
    • Place of Presentation
      大阪・大阪大学医学部学友会館
    • Year and Date
      2014-07-25 – 2014-07-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] メダカにおけるゲノム編集技術(TALENs)を用いた損傷乗り越えDNA合成ポリメラーゼ遺伝子群変異体の作製2014

    • Author(s)
      藤川 芳宏、藤原(石川) 智子、佐久間 哲史、山本 卓、藤堂 剛
    • Organizer
      第36回光医学光生物学会
    • Place of Presentation
      大阪・大阪大学医学部学友会館
    • Year and Date
      2014-07-25 – 2014-07-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] メダカにおける人工ヌクレアーゼ(TALEN)を用いた損傷乗り越えポリメラーゼ変異体の作製2013

    • Author(s)
      藤川芳宏、藤原(石川)智子、佐久間哲史、山本卓、藤堂剛
    • Organizer
      日本環境変異原学会第42回大会
    • Place of Presentation
      岡山市
    • Related Report
      2013 Research-status Report
  • [Presentation] Targeted Inactivation of Rev1 gene2013

    • Author(s)
      Tomoko Ishikawa-Fujiwara, Kumi Nakamura, Yoshihiro Fujikawa, Takeshi Todo
    • Organizer
      The 6th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Research-status Report
  • [Presentation] The molecular structure and damaged-DNA repair activity affected by the chromophore binding states in Cryptochrome-DASH from Platynereis dumerili2013

    • Author(s)
      Kazunori Zikihara, Kohei Kasakawa, Tomoko Ishikawa, Kristin Tessmar-Raible, Satoru Tokutomi, Takeshi Todo
    • Organizer
      The 6th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Research-status Report
  • [Presentation] Targeted Inactivation of DNA photolyase family genes using CRISPR system2013

    • Author(s)
      Tomoko Ishikawa-Fujiwara, Kumi Nakamura, Yoshihiro Fujikawa, Takeshi Todo
    • Organizer
      The 6th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Research-status Report
  • [Presentation] DNA-PK 自己リン酸化異常時におけるp53のDSB 修復経路選択への関わり2013

    • Author(s)
      大西 壽子、漆原 佑介、藤原 智子、尾田 正二、藤堂  剛、三谷 啓志
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      青森市
    • Related Report
      2013 Research-status Report
  • [Presentation] ゲノム編集技術(CRISPR)を利用したメダカ光回復酵素遺伝子変異体の作製2013

    • Author(s)
      藤原(石川) 智子、藤川 芳宏、中村 公美、藤堂  剛
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      青森市
    • Related Report
      2013 Research-status Report
  • [Presentation] ゲノム編集技術(TALEN)を用いたメダカにおけるTLS ポリメラーゼ変異体の網羅的作製2013

    • Author(s)
      藤川 芳宏、藤原(石川) 智子、中村 公美、佐久間 哲史、山本  卓、藤堂  剛
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      青森市
    • Related Report
      2013 Research-status Report
  • [Presentation] ゲノム編集技術TALEN を用いた特異的欠損部位変異の作製方法の樹立;メダカRev1 BRCT ドメイン欠損変異体作製2013

    • Author(s)
      中村 公美、藤原(石川) 智子、佐久間 哲史、山本  卓、藤堂  剛
    • Organizer
      日本放射線影響学会第56回大会
    • Place of Presentation
      青森市
    • Related Report
      2013 Research-status Report
  • [Presentation] Genome editing in medaka: targeted inactivation of TLS polymerase genes usingTALENs2013

    • Author(s)
      Yoshihiro Fujikawa, Tomoko Ishikawa-Fujiwara, Kumi Nakamura, Tetsushi Sakuma, Takashi Yamamoto, Takeshi Todo
    • Organizer
      18th Japanese Medaka and Zebrafish Meeting
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish2013

    • Author(s)
      Tokiro Ishikawa, Tetsuya Okada, Tomoko Ishikawa-Fujiwara, Takeshi Todo, Yasuhiro Kamei, Shuji Shigenobu, Minoru Tanaka, Taro L. Saito, Jun Yoshimura, Shinichi Morishita, Atsushi Toyoda, Yoshiyuki Sakaki, Yoshihito Taniguchi, Shunichi Takeda, Kazutoshi Mori
    • Organizer
      18th Japanese Medaka and Zebrafish Meeting
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] Genome editing in medaka: targeted inactivation of DNA photolyase family genes using CRISPR system2013

    • Author(s)
      Tomoko Ishikawa-Fujiwara, Yoshihiro Fujikawa, Kumi Nakamura, Takeshi Todo
    • Organizer
      18th Japanese Medaka and Zebrafish Meeting
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report
  • [Presentation] Genome editing in medaka: targeted inactivation of Rev1 gene by TALEN2013

    • Author(s)
      Kumi Nakamura, Yoshihiro Fujikawa, Tomoko Ishikawa-Fujiwara, Tetsushi Sakuma, Takashi Yamamoto, Takeshi Todo
    • Organizer
      18th Japanese Medaka and Zebrafish Meeting
    • Place of Presentation
      仙台市
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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