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Construction of conductive DNA wires toward single-molecule electronics

Research Project

Project/Area Number 25620136
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Research InstitutionUniversity of Hyogo

Principal Investigator

YAMANA Kazushige  兵庫県立大学, 工学(系)研究科(研究院), 教授 (70192408)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsDNA / 電子移動 / ペリレンジイミド / 会合体 / 機能性色素 / 分子ワイヤー
Outline of Final Research Achievements

Artificial nucleic acids modified with functional molecules have been utilized to develop DNA-based biosensors and biological imaging tools. In this research, we studied convenient and site-specific covalent modification of DNA with the perylenediimide (PDI) molecules through inclusion complex of PDI with DNA and construction of the cluster of the PDI molecules. The abasic (AP) sites generated by the removal of deoxyuridines with enzymatic reaction were used as molecular binding sites and reactive sites for covalent modification. Reductive amination in the presence of NaBH3CN was applied for conjugation at the abasic site. The PDI molecules were also incorporated at the AP sites in good yield. These results show that the organization and covalent modification using the abasic sites within DNA can be applied to construct the conjugates of DNA with functional molecules, which is applicable for the design of DNA-based molecular electronics and diagnostic tools.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (15 results)

All 2015 2014 2013

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (7 results)

  • [Journal Article] Photoresponsive DNA monolayer prepared by primer extension reaction on the electrode2015

    • Author(s)
      Takada, T.; Takemura, M.; Kawano, Y.; Nakamura, M.; Yamana, K.
    • Journal Title

      Langmuir

      Volume: 31 Issue: 13 Pages: 3993-3998

    • DOI

      10.1021/la505013u

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photocurrent generation through charge-transfer processes in noncovalent perylenediimide/DNA complexes2015

    • Author(s)
      Takada, T.; Ido, M.; Ashida, A.; Nakamura, M.; Fujitsuka, M.; Kawai, K.; Majima, T.; Yamana, K.
    • Journal Title

      Chem. Eur. J.

      Volume: 18 Issue: 18 Pages: 6846-4851

    • DOI

      10.1002/chem.201406592

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diketopyrrolopyrrole J-aggregates formed by self-organization with DNA2014

    • Author(s)
      Koji Tsuto, Mitsunobu Nakamura, Tadao Takada, Kazushige Yamana
    • Journal Title

      Chem. Asian J.

      Volume: 印刷中 Issue: 6 Pages: 1618-1622

    • DOI

      10.1002/asia.201402063

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Light-up fluorescent probes utilizing binding behavior of perylenediimide derivatives to a hydrophobic pocket within DNA2014

    • Author(s)
      Takada, T.; Yamaguchi, K.; Tsukamoto, S.; Nakamura, M.; Yamana, K.
    • Journal Title

      Analyst

      Volume: 139 Issue: 16 Pages: 4016-4021

    • DOI

      10.1039/c4an00493k

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Photocurrent Generation Enhanced by Charge Delocalization over Stacked Perylenediimide Chromophores Assembled within DNA2014

    • Author(s)
      T. Takada, A. Ashida, M. Nakamura, M. Fujitsuka, T. Majima, K. Yamana
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 136 Issue: 19 Pages: 6812-6817

    • DOI

      10.1021/ja501535z

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation of ferrocene-functionalized gold nanoparticles by primer extension reaction on the particle surface2014

    • Author(s)
      T. Takada, T. Tochi, M. Nakamura, K. Yamana
    • Journal Title

      Bioorg. Med. Chem. Lett.

      Volume: 24 Issue: 12 Pages: 2661-2663

    • DOI

      10.1016/j.bmcl.2014.04.062

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cationic perylenediimide as a specific fluorescent binder to mismatch containing DNA2013

    • Author(s)
      T. Takada, A. Ashida, M. Nakamura, K. Yamana
    • Journal Title

      Bioorg. Med. Chem.

      Volume: 21 Issue: 19 Pages: 6011-6014

    • DOI

      10.1016/j.bmc.2013.07.040

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Synthesis and charge transferability of DNA possessing a naphthalimide photosensitizer at an extrahelical position2013

    • Author(s)
      Tadao Takada, Yuta Kawano, Akane Ashida, Mitsunobu Nakamura, Kiyohiko Kawai, Tetsuro Majima, Kazushige Yamana
    • Journal Title

      Tetrahedron Letters

      Volume: 54 Issue: 35 Pages: 4796-4799

    • DOI

      10.1016/j.tetlet.2013.06.140

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] DNA-色素会合体による光電変換システム2015

    • Author(s)
      除村あゆみ・津門貢司・中村光伸・高田忠雄・山名一成
    • Organizer
      日本化学会第95春季年会(2015)
    • Place of Presentation
      日本大学
    • Year and Date
      2015-03-25 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA構造を利用したポルフィリン集合体の構築2015

    • Author(s)
      井脇世拓・高田忠雄・中村光伸・山名一成
    • Organizer
      日本化学会第95春季年会(2015)
    • Place of Presentation
      日本大学
    • Year and Date
      2015-03-25 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA-templated synthesis of cofacially stacked perylenediimide assembly2014

    • Author(s)
      M. Ido, T. Takada, M. Nakamura and K. Yamana
    • Organizer
      ISNAC 2014
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Photochemical properties of DNA templated dye aggregates2014

    • Author(s)
      K. Tsuto, M. Nakamura, T. Takada and K. Yamana
    • Organizer
      ISNAC 2014
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] DNA自己組織化を利用した金ナノ粒子/色素複合体の構築と光応答2014

    • Author(s)
      守法寿恵・高田忠雄・中村光伸・山名一成
    • Organizer
      第60回高分子研究発表会(神戸)
    • Place of Presentation
      兵庫県民会館
    • Year and Date
      2014-07-24 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 塩基除去反応を利用した DNA/ペリレンジイミド複合体の作製2014

    • Author(s)
      井戸美佐・高田忠雄・中村光伸・山名一成
    • Organizer
      日本化学会第94春季年会(2014)
    • Place of Presentation
      名古屋大学東山キャンパス
    • Related Report
      2013 Research-status Report
  • [Presentation] DNA-templated oligomerization of perylenediimide chromophores via Schiff base formation2013

    • Author(s)
      Misa Ido, Tadao Takada, Mitsunobu Nakamura, and Kazushige Yamana
    • Organizer
      ISNAC2013
    • Place of Presentation
      神奈川大学
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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