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Genomic constrain and plasticity of vocal phenotypes by regulation of allelic imbalance

Research Project

Project/Area Number 25640097
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Genome biology
Research InstitutionHokkaido University

Principal Investigator

Wada Kazuhiro  北海道大学, 理学(系)研究科(研究院), 准教授 (70451408)

Co-Investigator(Renkei-kenkyūsha) MINETA Katsuhiko  北海道大学, 大学院情報科学研究科, 准教授 (40374615)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords発声学習 / 対立遺伝子不均衡 / ソングバード / ハイブリッド / 種特異的遺伝子発現 / 個体差 / 環境要因 / 遺伝要因 / 遺伝子発現 / 種特異的 / 学習臨界期
Outline of Final Research Achievements

Both nature and nurture influence the learning process. Birdsong is a learned vocal behavior that is regulated by species-specific genetic constraints and individual hearing experience. However, how and when genetic and environmental instructions contribute to modulate vocal learning is not well known. In this study, we developed hybrid songbirds, whose parental species sing different species-specific songs. The hybrid songbirds showed the full-spectrum of variability of song features of parental species. Based on this behavioral data, we further performed next-generation sequence (RNA-seq) from two brain areas related to regulation of song patterns. Then, we found species-specific SNPS and genes which were differently regulated in the brain areas between two parental species and hybrids. We are further working on the studying the allelic imbalance of the species-specifically regulated genes.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (18 results)

All 2015 2014 2013 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Invited: 4 results) Book (2 results)

  • [Journal Article] Diurnal oscillation of vocal development associated with clustered singing by juvenile songbirds2015

    • Author(s)
      Ohgushi E, Mori C, Wada K.
    • Journal Title

      Journal of Experimental Biology

      Volume: 218 Issue: 14 Pages: 2260

    • DOI

      10.1242/jeb.115105

    • URL

      https://pure.teikyo.jp/en/publications/3fe6b943-52ea-447c-924d-8163419875d6

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Songbird: a unique animal model for studying the molecular basis of disorders of vocal development and communication2015

    • Author(s)
      Mori C, Wada K.
    • Journal Title

      Experimental Animals

      Volume: 64 Issue: 3 Pages: 221-230

    • DOI

      10.1538/expanim.15-0008

    • NAID

      130005091034

    • ISSN
      0007-5124, 1341-1357, 1881-7122
    • URL

      https://pure.teikyo.jp/en/publications/0bb1f9bf-ea4d-42ba-b548-274ef2dac8b7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Audition-independent vocal crystallization associated with intrinsic developmental gene expression dynamics2015

    • Author(s)
      Mori C, Wada K
    • Journal Title

      Journal of Neuroscience

      Volume: 35 Issue: 3 Pages: 878

    • DOI

      10.1523/jneurosci.1804-14.2015

    • NAID

      120005624078

    • URL

      https://pure.teikyo.jp/en/publications/904e0601-f7bf-46ed-8ae4-70edbc8fbd8a

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A global view of the functional molecular organization of the avian cerebrum: Mirror images and functional columns.2013

    • Author(s)
      Jarvis ED*, Yu J, Rivas MV, Horita H, Feenders G, Whitney O, Jarvis S, Jarvis ER, Kubikova L, Puck AE, Siang-Bakshi C, Martin S, McElroy M, Hara E, Howard J, Mouritsen H, Chen CC*, Wada K*.
    • Journal Title

      J Comp Neurol.

      Volume: 521 Issue: 16 Pages: 3614-3665

    • DOI

      10.1002/cne.23404

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Differential androgen receptor expression and DNA methylation state in striatum song nucleus Area X between wild and domesticated songbird strains2013

    • Author(s)
      Wada *, Hayase S, Imai R, Mori C, Kobayashi M, Liu WC, Takahasi M, Okanoya K.
    • Journal Title

      Eur J Neurosci

      Volume: 38 Issue: 4 Pages: 2600

    • DOI

      10.1111/ejn.12258

    • URL

      https://pure.teikyo.jp/en/publications/a00bf81b-e69a-431f-aeba-a3636369811e

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rudimentary substrates for vocal learning in a suboscine.2013

    • Author(s)
      Liu WC, Wada K, Jarvis ED, Nottebohm F
    • Journal Title

      Nature Communication

      Volume: 4 Issue: 1 Pages: 2082-2082

    • DOI

      10.1038/ncomms3082

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 鳴禽類交雑種の歌学習の個体差に与える学習バイアス2015

    • Author(s)
      澤井梓、和多和宏
    • Organizer
      日本動物行動学会
    • Place of Presentation
      東京海洋大学 (東京・東京)
    • Year and Date
      2015-11-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] Familial genetic bias in vocal babbling pattern at early song2015

    • Author(s)
      Sato D, Wada K
    • Organizer
      Society for Neuroscience meeting
    • Place of Presentation
      ワシントDC (アメリカ)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Audition-Independent Vocal Crystallization Associated with Intrinsic Developmental Gene Expression Dynamics2015

    • Author(s)
      森千紘、和多和宏
    • Organizer
      第38回日本神経科学会年会
    • Place of Presentation
      神戸コンベンションセンター(兵庫県・神戸市)
    • Year and Date
      2015-07-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] Experinece-dependent regulation of singing-driven gene expression in the song system during the critical period of vocal learning2014

    • Author(s)
      Hayase S, Ohgushi E, Kobayashi M, Wada K
    • Organizer
      Society for Neuroscience meeting
    • Place of Presentation
      Washington DC convention center(アメリカ ワシントンDC)
    • Year and Date
      2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] 学習によって獲得されるソングバード発声行動表現型可塑性:自らの行動によって駆動される『種としての拘束と個としての自由』2014

    • Author(s)
      和多和宏
    • Organizer
      第7回 若手Evo-Devo青年の会: 「変動する環境と発生への衝撃」
    • Place of Presentation
      遺伝学研究所(静岡県)
    • Year and Date
      2014-10-11 – 2014-10-12
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 発声行動依存的遺伝子発現動態変化と発声学習臨界期制御2014

    • Author(s)
      和多和宏
    • Organizer
      記憶回路研究会:「個体内記憶回路の同定とその機能解析による学習記憶制御基盤の統合的理解」
    • Place of Presentation
      生理学研究所(愛知県)
    • Year and Date
      2014-10-08 – 2014-10-09
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] A neuronal constraint and learnability of a species-specific vocal pattern in songbirds2014

    • Author(s)
      Kazuhiro Wada
    • Organizer
      Cold Spring Harbor Asia Conference, Neurobiology: Diverse Species & Conserved Principles
    • Place of Presentation
      Dushu Lake Conference Hotel(中国 蘇州)
    • Year and Date
      2014-09-15 – 2014-09-19
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 鳴禽類ソングバードを用いた音声コミュニケーション障害の神経行動学的研究2014

    • Author(s)
      和多和宏
    • Organizer
      日本実験動物科学技術 さっぽろ2014(第61回日本実験動物学会総会・第48回日本実験動物技術者協会総会)
    • Place of Presentation
      札幌コンベンションセンター (北海道)
    • Year and Date
      2014-05-15
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Active and passive vocal crystallization associated with developmental gene expression dynamics2014

    • Author(s)
      Chihiro Mori & Kazuhiro Wada
    • Organizer
      Cold Spring Habor Laboratory meeting
    • Place of Presentation
      Cold Spring Habor Laboratory, NY, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] ソングバード歌発達における学習臨界期中の脳内遺伝子発現誘導率制御

    • Author(s)
      早瀬晋 、大串恵理、小林雅比古、和多和宏
    • Organizer
      日本神経科学会
    • Place of Presentation
      京都 国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Book] 「研究者が教える動物実験 第3巻」2015

    • Author(s)
      尾崎まみこ、村田芳博、藍浩之、定本久世、吉村和也、神崎亮平
    • Total Pages
      222
    • Publisher
      共立出版
    • Related Report
      2015 Annual Research Report
  • [Book] Methods in Neuroethological Research2013

    • Author(s)
      Ogawa H & Oka K
    • Total Pages
      175
    • Publisher
      Springer
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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