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Development of a method for increasing gene-targeting efficiency in human cells

Research Project

Project/Area Number 25650006
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionKyoto University

Principal Investigator

TAKEDA Shunichi  京都大学, 医学(系)研究科(研究院), 教授 (60188191)

Co-Investigator(Renkei-kenkyūsha) SASANUMA Hiroyuki  京都大学, 大学院医学研究科, 准教授 (00531691)
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsゲノム編集 / CRISPR/Cas9 / DNA組換え / 標的組換え / DT40 / ニワトリBリンパ細胞 / プロテオーム解析
Outline of Final Research Achievements

The CRISPR/Cas9 system, an artificial restriction enzyme, dramatically increases the efficiency of genetic manipulation, such as knock-in of designed point mutations, in human cell lines. However, genetic manipulation in primary cells is still a formidable challenge, because the efficiency of homologous recombination (HR) between genomic DNA and transfected DNA is still very low despite the usage of the CRISPR/Cas9 system. This study is to further increase the efficiency of genetic manipulation. To this end, I have explored molecular mechanisms underlying the extremely efficient HR of a chicken B cell line, DT40. HR is a very complex biochemical reaction, which is carried out by more than 50 proteins including many unidentified proteins. Having a support of Grant-in-Aid for Challenging Exploratory Research, we have established methods of biochemically purifying proteins involved in HR. In future, I will purify proteins involved in HR from DT40 (wild-type and HR deficient cell lines).

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (2 results)

All 2014

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results)

  • [Journal Article] SUMO-targeted ubiquitin ligase RNF4 plays a critical role in preventing chromosome loss.2014

    • Author(s)
      Hirota K, Tsuda M, Murai J, Takagi T, Keka IS, Narita T, Fujita M, Sasanuma H, Kobayashi J, Takeda S
    • Journal Title

      Genes Cells

      Volume: 19 Issue: 10 Pages: 743-754

    • DOI

      10.1111/gtc.12173

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Compensatory functions and interdependency of the DNA-binding domain of BRCA2 with the BRCA1-PALB2-BRCA2 complex.2014

    • Author(s)
      Al Abo M, Dejsuphong D, Hirota K, Yonetani Y, Yamazoe M, Kurumizaka H, Takeda S
    • Journal Title

      Cancer Res.

      Volume: 74 Issue: 3 Pages: 797-807

    • DOI

      10.1158/0008-5472.can-13-1443

    • Related Report
      2013 Research-status Report
    • Peer Reviewed

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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