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Development of systematic approaches to explore protein acylation using immunoaffinity

Research Project

Project/Area Number 25650008
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionOsaka City University (2014-2015)
Osaka University (2013)

Principal Investigator

Masui Ryoji  大阪市立大学, 大学院理学研究科, 教授 (40252580)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsプロテオーム / 蛋白質 / シグナル伝達 / 発現制御 / 細菌 / 翻訳後修飾 / アセチル化
Outline of Final Research Achievements

Using a proteomics approach in combination with immunoprecipitation, we identified 197 lysine acetylation sites from 128 proteins, 361 lysine propionylation sites from 183 proteins, and 18 succinylation sites from 14 proteins in Thermus thermophilus HB8, an extremely thermophilic eubacterium. It was demonstrated for the first time that lysine propionylation is a prevalent post-translational modification. The types and numbers of acylation sites varied depending on the growth phase and carbon source. In addition, acylproteome analysis for other four bacteria revealed that abundance of these acylation varied by species and suggested that different acylation are regulated separately and may serve different functions. Mapping of the acylation sites on the structures proposed the likely regulatory function of these post-translational modification.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (21 results)

All 2015 2014 2013

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Acknowledgement Compliant: 1 results) Presentation (16 results)

  • [Journal Article] Structural and biochemical studies on the reaction mechanism of uridine-cytidine kinase2015

    • Author(s)
      Tomoike, F., Nakagawa, N., Kuramitsu, S., Masui R.
    • Journal Title

      Protein J.

      Volume: 34 Pages: 411-420

    • NAID

      120006577675

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus2015

    • Author(s)
      Ebihara, A., Manzoku, M. Fukui, K., Shimada, A., Morita, R., Masui, R., and Kuramitsu, S.
    • Journal Title

      Extremophiles

      Volume: 19 Pages: 775-785

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lysine propionylation is a prevalent post-translational modification in Thermus thermophilus.2014

    • Author(s)
      Okanishi, H., Kim, K., Masui, R., Kuramitsu, S.
    • Journal Title

      Mol. Cell. Proteomics

      Volume: 13 Issue: 9 Pages: 2382-2398

    • DOI

      10.1074/mcp.m113.035659

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural insights of post-translational modification sites in the proteome of Thermus thermophilus2014

    • Author(s)
      Ryoji Masui, Yoshio Takahata, Masao Inoue, Yota Iio, Hiroki Okanishi, Kwang Kim, Noriko Nakagawa, Kei Yura, Seiki Kuramitsu
    • Journal Title

      Journal of Structural and Functional Genomics

      Volume: 印刷中

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus2013

    • Author(s)
      Hiroki Okanishi, Kwang Kim, Ryoji Masui, Seiki Kuramitsu
    • Journal Title

      Journal of Proteome Research

      Volume: 12 Issue: 9 Pages: 3952-3968

    • DOI

      10.1021/pr400245k

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] DNA 修復タンパク質 RadA/Sms C 末端ドメインの構造と機能2015

    • Author(s)
      井上真男,福井健二,藤井裕己, 矢野貴人, 倉光成紀, 増井良治
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 蛋白質翻訳後修飾は、真核・原核生物に広く存在する:とくに、新規プロピオニル化について2015

    • Author(s)
      岡西広樹,金 光,倉光成紀,増井良治
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高度好熱菌 Thermus thermophilus HB8 由来 NurA, HerA は DNA 鎖架橋構造の修復に対して抑制的に働く2015

    • Author(s)
      藤井裕己, 井上真男, 福井健二, 金光, 倉光成紀, 上田昌宏, 増井良治
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Whole cell analysis of protein phosphorylation in the model prokaryote2015

    • Author(s)
      飯尾洋太,中川紀子,倉光成紀, 増井良治
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Biophysical characterization of a DNA-binding protein (TTHA0139) and a protein kinase (TTHA1370) from Thermus thermophilus HB82015

    • Author(s)
      高尾和也,藤野友輔,飯尾洋太,宮川武郎,井上真男,倉光成紀,増井良治
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 福井健二,飯野 均,島田敦弘,増井良治,倉光成紀2015

    • Author(s)
      DNA ミスマッチ修復系における DNA 切断活性の制御機構
    • Organizer
      第5回モデル生物丸ごと一匹学会
    • Place of Presentation
      大阪大学豊中キャンパス (大阪府・豊中市)
    • Year and Date
      2015-12-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] バクテリア由来アーキア型ヌクレアーゼ NurA とヘリカーゼ HerA の細胞機能解析2015

    • Author(s)
      藤井裕己, 井上真男, 福井健二, 金光, 倉光成紀, 上田昌宏, 増井良治
    • Organizer
      BMB2015 (第3回日本分子生物学会年会・第88回日本生化学会大会 合同学会)
    • Place of Presentation
      神戸ポートアイランド (兵庫県・神戸市)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] RecA 様タンパク質 RadA/Sms C 末端ドメインの構造と機能2015

    • Author(s)
      井上真男, 福井健二, 藤井裕己, 矢野貴人, 倉光成紀, 増井良治
    • Organizer
      BMB2015 (第3回日本分子生物学会年会・第88回日本生化学会大会 合同学会)
    • Place of Presentation
      神戸ポートアイランド (兵庫県・神戸市)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] 生物に広く存在する翻訳後修飾としての Lys 残基プロピオニル化の発見2015

    • Author(s)
      岡西広樹,金光,中川紀子,倉光成紀,増井良治
    • Organizer
      日本プロテオーム学会2015年会
    • Place of Presentation
      くまもと森都心プラザ (熊本県・熊本市)
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高度好熱菌Thermus thermophilus HB8におけるアシル化プロテオーム解析:生体内に広く存在する翻訳後修飾としてのプロピオニル化の発見2015

    • Author(s)
      岡西広樹、金光、増井良治、倉光成紀
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島市あわぎんホール (徳島県・徳島市)
    • Year and Date
      2015-06-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] バクテリア由来アーキア型ヌクレアーゼ・ヘリカーゼ様酵素の機能解析2015

    • Author(s)
      藤井裕己、井上真男、福井健二、金光、倉光成紀、上田昌宏、増井良治
    • Organizer
      第62回日本生化学会近畿支部例会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス (滋賀県・草津市)
    • Year and Date
      2015-05-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] バクテリアにおける翻訳後修飾:高度好熱菌におけるアシル化プロテオーム解析2014

    • Author(s)
      岡西 広樹, 金 光, 増井 良治, 倉光 成紀
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館 (京都府京都市左京区宝ケ池)
    • Year and Date
      2014-10-17
    • Related Report
      2014 Research-status Report
  • [Presentation] バクテリア蛋白質における翻訳後修飾部位の立体構造的解析2014

    • Author(s)
      増井良治,Kwang Kim,高畑良雄,岡西広樹,井上真男,飯尾洋太,中川紀子,由良 敬,倉光成紀
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜産貿ホールマリネリア (神奈川県横浜市中区山下町2)
    • Year and Date
      2014-06-27
    • Related Report
      2014 Research-status Report
  • [Presentation] バクテリア蛋白質における翻訳後修飾部位の立体構造的解析2014

    • Author(s)
      増井良治,Kwang Kim,高畑良雄,岡西広樹,井上真男,飯尾洋太,中川紀子,由良 敬,倉光成紀
    • Organizer
      第61回日本生化学会近畿支部例会
    • Place of Presentation
      京都産業大学 (京都府京都市北区上賀茂本山)
    • Year and Date
      2014-05-17
    • Related Report
      2014 Research-status Report
  • [Presentation] Protein Acetylation in Thermus thermophilus HB8: One of the Prevalent Post-translational Modifications in Prokaryotes2013

    • Author(s)
      Hiroki Okanishi, Kwang Kim, Yota Iio, Ryoji Masui, Seiki Kuramitsu
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Research-status Report
  • [Presentation] Structural genomics of Thermus thermophilus HB8: Post-translational modification sites2013

    • Author(s)
      Ryoji Masui, Kwang Kim, Yoshio Takahata, Hiroki Okanishi, Masao Inoue, Yota Iio, Noriko Nakagawa, Akeo Shinki, Shigeyuki Yokoyama, Seiki Kuramitsu
    • Organizer
      2013年度 酵素補酵素研究会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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