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Real-time imaging of histone modification dynamics in the specific gene loci

Research Project

Project/Area Number 25650009
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionTokyo Institute of Technology (2014-2015)
Osaka University (2013)

Principal Investigator

Sato Yuko  東京工業大学, 生命理工学研究科, 科学研究費研究員 (70435882)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsエピジェネティクス / イメージング / クロマチン / ライブイメージング / 蛍光プローブ / ヒストン修飾 / 細胞内抗体 / scFv / 細胞核 / 遺伝子
Outline of Final Research Achievements

This project aimed to visualize the dynamics of histone modification in the specific gene loci in living cells. To visualize specific genome loci, we searched repetitive DNA sequence enriched in single loci and designed TALE protein. However, TALEs that are expected to bind to these sequences failed to label them in living cells. On the other hand, using a mintbody specific to phosphorylated RNA polymerase II combined with ANCHOR system that labeled the specific locus, active transcription at the single gene locus was visualized in human cells.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (20 results)

All 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (5 results) (of which Open Access: 4 results,  Peer Reviewed: 4 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 1 results) Book (3 results) Remarks (3 results)

  • [Int'l Joint Research] トゥールーズ第三大学(フランス)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Histone Acetylation on <i>Drosophila</i> Polytene Chromosomes Visualized by Mintbody2015

    • Author(s)
      Sato Y, Mukai M, Kimura H
    • Journal Title

      CYTOLOGIA

      Volume: 80 Issue: 4 Pages: 383-384

    • DOI

      10.1508/cytologia.80.383

    • NAID

      130005118546

    • ISSN
      0011-4545, 1348-7019
    • Related Report
      2015 Annual Research Report
    • Open Access
  • [Journal Article] Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells.2014

    • Author(s)
      Stasevich TJ, Sato Y, Nozaki N, Kimura H.
    • Journal Title

      Methods

      Volume: 70 Issue: 2-3 Pages: 77-88

    • DOI

      10.1016/j.ymeth.2014.08.002

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Regulation of RNA polymerase II activation by histone acetylation in single living cells2014

    • Author(s)
      Stasevich TJ, Hayashi-Takanaka Y, Sato Y, Maehara K, Ohkawa Y, Sakata-Sogawa K, Tokunaga M, Nagase T, Nozaki N, McNally JG, Kimura H
    • Journal Title

      Nature

      Volume: 516 Issue: 7530 Pages: 272-275

    • DOI

      10.1038/nature13714

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genetically encoded system to track histone modification in vivo.2013

    • Author(s)
      Yuko Sato, Masanori Mukai, Jun Ueda, Michiko Muraki, Timothy J. Stasevich, Naoki Horikoshi, Tomoya Kujirai, Hiroaki Kita, Taisuke Kimura, Seiji Hira, Yasushi Okada, Yoko Hayashi-Takanaka, Chikashi Obuse, Hitoshi Kurumizaka, Atsuo Kawahara, Kazuo Yamagata, Naohito Nozaki and Hiroshi Kimura
    • Journal Title

      Scientific Reports

      Volume: 3 Issue: 1 Pages: 2436-2436

    • DOI

      10.1038/srep02436

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis of a nucleosome containing histone H2A. B/H2A. Bbd that transiently associates with reorganized chromatin.2013

    • Author(s)
      Arimura Y., Kimura H., Oda T., Sato K., Osakabe A., Tachiwana H., Sato Y., Kinugasa Y., Ikura T., Sugiyama M., Sato M., Kurumizaka H.
    • Journal Title

      Sci Rep.

      Volume: 3 Issue: 1 Pages: 3510-3510

    • DOI

      10.1038/srep03510

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Visualizing the inactive X chromosome in vivo by using H4K20me1-specific intracellular antibody probe2015

    • Author(s)
      Sato Y, Kimura H
    • Organizer
      EMBL Conference “Nuclear structure and dynamics”
    • Place of Presentation
      Isle sur Sorgue (フランス)
    • Year and Date
      2015-10-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] H4K20me1特異的細胞内抗体を用いた不活性X染色体動態のin vivo解析2014

    • Author(s)
      佐藤優子、木村宏
    • Organizer
      第37回 日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-12-25 – 2014-12-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Visualization of histone modification dynamics during zygotic genome activation in Zebrafish2014

    • Author(s)
      Sato Y and Kimura H
    • Organizer
      第20回 小型魚類研究会
    • Place of Presentation
      慶應義塾大学 薬学部(芝共立キャンパス)
    • Year and Date
      2014-09-20 – 2014-09-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Intracellular antibody probes for visualizing histone modifications in vivo2014

    • Author(s)
      Sato Y and Kimura H
    • Organizer
      第37回 内藤コンファレンス
    • Place of Presentation
      北海道 ヒルトンニセコビレッジ
    • Year and Date
      2014-07-15 – 2014-07-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 細胞内抗体プローブを用いたヒストン修飾動態の生体イメージング2014

    • Author(s)
      佐藤優子、木村宏
    • Organizer
      第8回 日本エピジェネティクス研究会年会
    • Place of Presentation
      東京大学 伊藤国際学術研究センター
    • Year and Date
      2014-05-25 – 2014-05-27
    • Related Report
      2014 Research-status Report
  • [Presentation] Genetically encoded system to track histone acetylation in vivo

    • Author(s)
      佐藤 優子, 向 正則, Timothy J. Stasevich,木村 宏
    • Organizer
      EMBO Conference Series Chromatin and Epigenetics
    • Place of Presentation
      EMBL Heidelberg, Germany
    • Related Report
      2013 Research-status Report
  • [Presentation] 細胞内抗体プローブを用いたヒストンアセチル化動態のin vivoイメー

    • Author(s)
      佐藤優子、向 正則、Timothy J. Stasevich、木村 宏
    • Organizer
      第7回日本エピジェネティクス研究会年会
    • Place of Presentation
      奈良県新公会堂
    • Related Report
      2013 Research-status Report
  • [Presentation] ゼブラフィッシュ初期過程におけるヒストンアセチル化動態のin vivoイメージング

    • Author(s)
      佐藤 優子, 村木 倫子, 川原 敦雄, 木村宏
    • Organizer
      第36回 日本分子生物学会年会
    • Place of Presentation
      神戸国際展示場
    • Related Report
      2013 Research-status Report
  • [Book] Optical Probes in Biology (Jin Zhang, Sohum Mehta, Carsten Schultz ed)2014

    • Author(s)
      Kimura H and Sato Y
    • Total Pages
      511
    • Publisher
      CRC Press, London
    • Related Report
      2014 Research-status Report
  • [Book] エピジェネティクス-基礎研究から産業応用への展望-2014

    • Author(s)
      佐藤 優子, 木村 宏
    • Total Pages
      9
    • Publisher
      シーエムシー
    • Related Report
      2013 Research-status Report
  • [Book] エピジェネティクスと病気2013

    • Author(s)
      木村 宏, 佐藤 優子
    • Total Pages
      7
    • Publisher
      メディカルドゥ
    • Related Report
      2013 Research-status Report
  • [Remarks] 大阪大学ホームページ

    • URL

      http://www.fbs.osaka-u.ac.jp/labs/hiraoka/kimura/index.html

    • Related Report
      2013 Research-status Report
  • [Remarks] 大阪大学生命機能研究科の研究成果紹介のページ

    • URL

      http://www.fbs.osaka-u.ac.jp/jpn/events/achievement/sato-kimura-20130812/

    • Related Report
      2013 Research-status Report
  • [Remarks] 大阪大学の研究成果紹介ページ

    • URL

      http://resou.osaka-u.ac.jp/ja/research/2013/20130814_1

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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