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Protein crystallization method in gel capsules with nucleants for contactless handling of crystals

Research Project

Project/Area Number 25650026
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Sugahara Michihiro  国立研究開発法人理化学研究所, 放射光科学総合研究センター, 特別研究員 (00415192)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsタンパク質結晶化 / ゲル / ゼオライト / 金属有機構造体 / ゲルカプセル
Outline of Final Research Achievements

A simple technique for protein crystallization in ionically cross-linked polysaccharide (alginate and carrageenan) gel capsules has been developed for contactless handling of crystals in X-ray crystallography. This method is designed to reduce mechanical damage to crystals caused by physical contact between crystal and mount tool and by osmotic shock during various manipulations including cryoprotection, heavy-atom derivatization and ligand soaking experiments. In this study, ten test proteins could be successfully crystallized in gel capsules. Two complete diffraction data sets from crystals of proteins in gel capsules were collected at 100 K without removing the crystals, showing that the crystals had low mosaicities. To demonstrate heavy-atom derivatization, lysozyme crystals were successfully derivatized with Pt atoms within alginate gel capsules. These results suggest that gel capsules prevent serious damage to protein crystals during such experiments.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (10 results)

All 2016 2015 2014 2013

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) Book (1 results)

  • [Journal Article] Oil-free hyaluronic acid matrix for serial femtosecond crystallography2016

    • Author(s)
      Michihiro Sugahara, Changyong Song, Mamoru Suzuki, Tetsuya Masuda, Shigeyuki Inoue, Takanori Nakane, Fumiaki Yumoto, Eriko Nango, Rie Tanaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Keiji Numata & So Iwata
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 24484-24484

    • DOI

      10.1038/srep24484

    • NAID

      120005749903

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.2015

    • Author(s)
      Nakane T, Song C, Suzuki M, Nango E, Kobayashi J, Masuda T, Inoue S, Mizohata E, Nakatsu T, Tanaka T, Tanaka R, Shimamura T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Iwata S, Sugahara M.
    • Journal Title

      Acta Crystallogr D Biol Crystallogr.

      Volume: 71 Issue: 12 Pages: 2519-25

    • DOI

      10.1107/s139900471501857x

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A technique for high-throughput protein crystallization in ionically cross-linked polysaccharide gel beads for X-ray diffraction experiments2014

    • Author(s)
      Michihiro Sugahara
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 4 Pages: e95017-e95017

    • DOI

      10.1371/journal.pone.0095017

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] シリアルフェムト秒結晶構造解析のための汎用的タンパク質キャリヤ「グリースマトリックス」2015

    • Author(s)
      菅原道泰
    • Organizer
      第15回蛋白質科学会年会
    • Place of Presentation
      徳島あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 結晶化促進物質を利用したタンパク質結晶化2014

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      平成26年度 日本結晶学会 年会
    • Place of Presentation
      東京大学農学部
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Research-status Report
  • [Presentation] 自動ゲルビーズ内タンパク質結晶化スクリーニング2014

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] 多糖ゲルビーズ内タンパク質結晶からのX線回折データ収集2014

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール マリネリア
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Research-status Report
  • [Presentation] 多糖ゲルカプセル内でのタンパク質結晶化2013

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] 結晶非接触操作を可能にするゲルカプセル内でのタンパク質結晶化法2013

    • Author(s)
      菅原道泰,国島直樹
    • Organizer
      平成25年度 日本結晶学会 年会
    • Place of Presentation
      熊本大学 黒髪キャンパス
    • Related Report
      2013 Research-status Report
  • [Book] 「タンパク質結晶の最前線」【第V編 総合編】タンパク質結晶の設計を目指した要素技術開発2013

    • Author(s)
      菅原道泰,国島直樹
    • Total Pages
      8
    • Publisher
      シーエムシー出版
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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