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Examination of the codon-acquisition hypothesis in the early evolution of life

Research Project

Project/Area Number 25650127
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Evolutionary biology
Research InstitutionOsaka University

Principal Investigator

ICHIHASHI Norikazu  大阪大学, 情報科学研究科, 准教授 (20448096)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsRNA複製酵素 / コドン / アミノ酸 / RNA / 進化 / 実験進化 / アミノ酸獲得仮説
Outline of Final Research Achievements

Present-day proteins consist of mainly 20 amino acids, while ancient proteins are considered to consist of fewer amino acids. In this study, I attempted to examine this hypothesis through developing an RNA replication enzyme that consists of fewer than 20 amino acids by using an evolvable RNA replication system that we have established. We succeeded to reduce the number of methionine codons in the RNA replicase from 8 to 2, but further reduction abolish the repllication activity. This result demonstrates that the development of an RNA replicase consists of 19 amino acids requires evolution under more different conditions, such as the completely methionine-depleted condition.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (10 results)

All 2015 2014 2013

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results) Presentation (4 results) (of which Invited: 2 results) Book (1 results)

  • [Journal Article] Adaptive Evolution of an Artificial RNA Genome to a Reduced Ribosome Environment.2015

    • Author(s)
      Mizuuchi, R., Ichihashi, N., Usui, K., Kazuta, Y., and Yomo, T
    • Journal Title

      ACS Synthetic biology

      Volume: 4 Issue: 3 Pages: 292-298

    • DOI

      10.1021/sb5000884

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of ribosomes on the kinetics of Qb replication2014

    • Author(s)
      Usui, K., Ichihashi, N., Kazuta, Y., Matsuura, T., Yomo, T
    • Journal Title

      FEBS Letters

      Volume: 588 Issue: 1 Pages: 117-123

    • DOI

      10.1016/j.febslet.2013.11.018

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Probabilistic model based error correction in a set of various mutant sequences analyzed by nextgeneration sequencing.2013

    • Author(s)
      Takuyo Aita, Norikazu Ichihashia, Tetsuya Yomo.
    • Journal Title

      Computational Biology and Chemistry

      Volume: 47 Pages: 221-230

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment2013

    • Author(s)
      Ichihashi, N., Usui, K., Kazuta, Y., Sunami, T., Matsuura T., Yomo, T
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 1-7

    • DOI

      10.1038/ncomms3494

    • NAID

      120006831817

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kinetic model of double-stranded RNA formation during long RNA replication by Qβreplicase2013

    • Author(s)
      Usui, K., Ichihashi, N., Kazuta, Y., Matsuura, T., Yomo, T
    • Journal Title

      FEBS Letters

      Volume: 587 Issue: 16 Pages: 2565-2571

    • DOI

      10.1016/j.febslet.2013.06.033

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Darwinian Evolution in a Translation-Coupled RNA Replication System Within a Cell-Like Compartment.2013

    • Author(s)
      Norikazu Ichihashi, Kimihito Usui, Tetsuya Yomo.
    • Organizer
      The International Astrobiology Workshop 2013(as the Japan Astrobiology Network Annual Meeting #6)
    • Place of Presentation
      JAXA/ISAS, Sagamihara, Japan
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 人工自己複製システムにおける利己的RNAの出現と耐性の進化2013

    • Author(s)
      市橋伯一, 四方哲也
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 次世代シーケンサーを用いた人工細胞モデルにおけるゲノムRNAの進化プロセスの解析2013

    • Author(s)
      市橋伯一, 中村昇太 , 四方哲也
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] PURE SYSTEMを用いた人工RNAゲノムの自己複製・進化システムの構築2013

    • Author(s)
      市橋伯一, 臼井公人, 四方哲也
    • Organizer
      第8回無細胞生命科学研究会
    • Place of Presentation
      新潟大学中央図書館
    • Related Report
      2013 Research-status Report
  • [Book] 進化分子工学 高速分子進化によるタンパク質・核酸の開発2013

    • Author(s)
      発行年 出 版 社 NTS 著 者 名 角南武志, 市橋伯一, 四方哲也
    • Total Pages
      466
    • Publisher
      NTS
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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