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Development and application of sex-linked DNA markers in a natural population of a dioecious tree

Research Project

Project/Area Number 25660125
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Forest science
Research InstitutionOsaka City University

Principal Investigator

NANAMI Satoshi  大阪市立大学, 大学院理学研究科, 准教授 (70326247)

Co-Investigator(Kenkyū-buntansha) 伊東 明  大阪市立大学, 大学院理学研究科, 教授 (40274344)
Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2014: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords雌雄異株植物 / 性判別 / DNAマーカー / 性比 / 森林 / 雌雄異株 / 空間分布 / RAD-Sequence / 繁殖生態 / 森林動態
Outline of Final Research Achievements

Five sex-linked DNA markers were developed in Nageia nagi (Podocarpaceae), a dioecious tree, using genome-wide RAD sequence data. We got 250,000 DNA sequence leads (100 bp) per individual in average. Although no female-specific sequences were found from these leads, 5 male-specific sequences were obtained. For the 5 sequences, PCR primer pairs were designed to identify sex of non-reproductive individuals.
For the assessment of sex ratio of non-reproductive seedlings, 148 seedlings from 4 sites in a natural population were analyzed on Mt. Mikasa, Nara Prefecture, Japan. The number of analyzed seedlings in a site raged from 32 to 45, and the proportion of males in a site varied from 0.465 to 0.600. No significant deviations of sex ratio from 1:1 were detected in any sites, and sex ratios were not significantly different among 4 sites. In the natural population of N. nagi, expected sex ratio at seedling stage was considered as 1:1 in any sites.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (2 results)

All 2017 2016

All Presentation (2 results)

  • [Presentation] 雌雄異株樹種ナギにおけるDNAマーカーを用いた実生の性比の判別2017

    • Author(s)
      名波哲(大阪市立大学・理), 大田明咲奈(大阪市立大学・理), 神丸千明(大阪市立大学・理), 永野惇(龍谷大学・農, JST さきがけ, 京都大学生態学研究センター), 手塚あゆみ(龍谷大学・農), 伊東明(大阪市立大学・理)
    • Organizer
      日本生態学会第64回全国大会
    • Place of Presentation
      東京都新宿区西早稲田1-6-1 早稲田大学早稲田キャンパス
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 雌雄異株樹種ナギの雌雄判別DNAマーカーの開発2016

    • Author(s)
      名波哲,神丸千明,永野惇,手塚 あゆみ,伊東明
    • Organizer
      第63回日本生態学会大会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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