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Is coral "personality" important for stress tolerance?

Research Project

Project/Area Number 25660172
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Aquatic life science
Research InstitutionOkinawa Institute of Science and Technology Graduate University

Principal Investigator

Shinzato Chuya  沖縄科学技術大学院大学, その他の研究科, 研究員 (70524726)

Co-Investigator(Renkei-kenkyūsha) SAKAI Kazuhiko  琉球大学, 熱帯生物圏研究センター, 教授 (50153838)
Research Collaborator IGUCHI Akira  沖縄工業高等専門学校, 生物資源工学科, 助教 (50547502)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2013: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Keywordsゲノム / サンゴ礁 / SNP / ストレス / サンゴ
Outline of Final Research Achievements

Coral reefs worldwide are declining due to climate change. It has been widely believed that coral stress tolerance is related with their symbiont type. In this project, based on a hypothesis that coral “personality” is more important for stress tolerance than their symbiont type, we aimed to identify genomic regions or genes that are important for stress response of corals using whole genome SNP (Single Nucleotide Polymorphism) analyses.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (16 results)

All 2016 2015 2014 Other

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 5 results,  Acknowledgement Compliant: 3 results) Presentation (9 results) (of which Invited: 3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Genome-wide SNP analysis explains coral diversity and recovery in the Ryukyu Archipelago2015

    • Author(s)
      Chuya Shinzato, Sutada Mungpakdee, Nana Arakaki, Noriyuki Satoh
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 18211-18211

    • DOI

      10.1038/srep18211

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Development of novel, cross-species microsatellite markers for Acropora corals using next-generation sequencing technology.2014

    • Author(s)
      Shinzato, C., Yasuoka, Y., Mungpakdee, D., Arakaki, N., Fujie, M., Nakajima, Y., Satoh, N.
    • Journal Title

      Front. Mar. Sci.,

      Volume: 2014 Pages: 1-14

    • DOI

      10.3389/fmars.2014.00011

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A genomic approach to coral-dinoflagellate symbiosis: Studies of Acropora digitifera and Symbiodinium2014

    • Author(s)
      Shinzato, C., Mungpakdee, S., Satoh, N., Shoguchi, E.
    • Journal Title

      Frontier in Microbiology

      Volume: 2014 Pages: 1-18

    • DOI

      10.3389/fmicb.2014.00336

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cross-species, amplifiable microsatellite markers for neoverrucid barnacles from deep-sea hydrothermal vents developed using next-generation sequencing.2014

    • Author(s)
      Nakajima Y, Shinzato C, Khalturina M, Watanabe H, Inagaki F, Satoh N, Mitarai S.
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 15 Issue: 8 Pages: 14364-71

    • DOI

      10.3390/ijms150814364

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans.2014

    • Author(s)
      Bosch T, Adamska M, Augustin R, Domazet-Loso T, Foret S, Fraune S, Funayama N, Grasis J, Hamada M, Hatta M, Hobmayer B, Kawai K, Klimovich A, Manuel M, Shinzato C, Technau U, Yum S, Miller DJ.
    • Journal Title

      BioEssays

      Volume: 36 Issue: 12 Pages: 1185-94

    • DOI

      10.1002/bies.201400065

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A snapshot of a coral "holobiont": a transcriptome assembly of the scleractinian coral, porites, captures a wide variety of genes from both the host and symbiotic zooxanthellae.2014

    • Author(s)
      Shinzato C, Inoue M, Kusakabe M
    • Journal Title

      PLoS ONE

      Volume: e85182 Issue: 1 Pages: e85182-e85182

    • DOI

      10.1371/journal.pone.0085182

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] ゲノムデータを用いた沖縄のコユビミドリイシサンゴの集団解析2016

    • Author(s)
      新里宙也・Mungpakdee Sutada・新垣奈々・佐藤矩行
    • Organizer
      日本水産学会春季大会
    • Place of Presentation
      東京海洋大学
    • Year and Date
      2016-03-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] サンゴ礁生態系の保全・再生へのゲノミクス技術の活用2015

    • Author(s)
      新里宙也
    • Organizer
      日本生物工学会大会
    • Place of Presentation
      城山観光ホテル
    • Year and Date
      2015-10-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 全ゲノムSNPデータを用いた沖縄のサンゴの集団ゲノム学解析2015

    • Author(s)
      新里宙也・Mungpakdee Sutada・新垣奈々・佐藤矩行
    • Organizer
      日本進化学会
    • Place of Presentation
      中央大学後楽園キャンパス
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 次世代シークエンサーを用いたミドリイシ属サンゴに広く使用できるマイクロサテライトマーカーの開発2014

    • Author(s)
      新里 宙也,安岡 由貴,Sutada Mungpakdee,座安 佑奈,新垣 奈々,藤江 学,中島 祐一,佐藤 矩行
    • Organizer
      日本サンゴ礁学会
    • Place of Presentation
      高知城ホール
    • Year and Date
      2014-11-29
    • Related Report
      2014 Research-status Report
  • [Presentation] 次世代シークエンサーを用いたミドリイシ属サンゴに広く使用できるマイクロサテライトマーカーの開発2014

    • Author(s)
      新里 宙也,安岡 由貴,Sutada Mungpakdee,座安 佑奈,新垣 奈々,藤江 学,中島 祐一,佐藤 矩行
    • Organizer
      日本動物学会
    • Place of Presentation
      東北大学
    • Year and Date
      2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] 造礁サンゴ(ハマサンゴ、Porites australiensis)“holobiont”のトランスクリプトーム解析2014

    • Author(s)
      新里宙也、井上麻夕里、日下部誠
    • Organizer
      マリンバイオテクノロジー学会
    • Place of Presentation
      三重大学
    • Year and Date
      2014-05-31
    • Related Report
      2014 Research-status Report
  • [Presentation] 「サンゴらしさ」をゲノムから見る:GFPと石灰化

    • Author(s)
      新里宙也 佐藤矩行
    • Organizer
      動物学会 関連集会
    • Place of Presentation
      岡山大学
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Sequencing the genomes of complex communities: transcriptome assembly of a coral “holobiont”

    • Author(s)
      Chuya Shinzato
    • Organizer
      Aidling workshop
    • Place of Presentation
      Aidling, Germany
    • Related Report
      2013 Research-status Report
  • [Presentation] Decoding whole genomes of a coral Acropora digitifera and a dinoflagellates Symbiodinium minutum

    • Author(s)
      Nori Satoh, Chuya Shinzato, Eiichi Shoguchi
    • Organizer
      日本サンゴ礁学会 公開ミニシンポジウム
    • Place of Presentation
      沖縄科学技術大学院大学
    • Related Report
      2013 Research-status Report
    • Invited
  • [Patent(Industrial Property Rights)] Cross-species microsatellite markers for Acropora corals2014

    • Inventor(s)
      新里宙也、スタダ ムンパッティ、中島祐一
    • Industrial Property Rights Holder
      新里宙也、スタダ ムンパッティ、中島祐一
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2014-093062
    • Filing Date
      2014-04-28
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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