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Optimization of direct reprograming methods by understanding the epigenomic features of descendant cell types.

Research Project

Project/Area Number 25660256
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Integrative animal science
Research InstitutionKeio University

Principal Investigator

ODA Mayumi  慶應義塾大学, 医学部, 助教 (80567511)

Research Collaborator SAKOTA Miki  慶應義塾大学, 医学部, 研究員
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords直接リプログラミング / DNAメチル化 / 転写因子 / ES細胞 / エピゲノム / 細胞分化誘導 / mRNA / 強制発現誘導系 / 細胞分化 / リプログラミング / 細胞種特異的遺伝子 / エピジェネティック制御
Outline of Final Research Achievements

In this study, we assessed the optimization of direct reprogramming method by analyzing the expression data of transcription factor (TF)-induced ES cell lines and found that the efficiency of cell differentiation examined by several cell type-specific markers was changed according to the role of TFs in direct reprogramming process. We also examined different culture conditions that alters genome-wide epigenetic status, and studied the results of TF-induction under different DNA methylation status. For the comparison, DNA methylation profiles of several tissues were made, which is expected to be used for the understanding the cell type-specific epigenomic patterns and the differences between their descendants.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (8 results)

All 2015 2014 2013 Other

All Presentation (6 results) Remarks (2 results)

  • [Presentation] 細胞種特異的遺伝子gene body領域におけるDNA低メチル化と転写マシナリーの長期的相互作用の可能性2015

    • Author(s)
      小田真由美、福田恵一、牧野伸司
    • Organizer
      日本再生医療学会総会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2015-03-19 – 2015-03-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 細胞種特異的遺伝子gene body領域におけるDNA脱メチルと転写マシナリーの長期的な相互作用2014

    • Author(s)
      小田真由美、福田恵一、牧野伸司
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 成熟細胞の細胞特異的遺伝子gene body領域における能動的DNA脱メチル化分子機構の関与2014

    • Author(s)
      小田真由美、福田恵一、牧野伸司
    • Organizer
      日本エピジェネティクス研究会年会
    • Place of Presentation
      伊藤国際学術研究センター
    • Year and Date
      2014-05-25 – 2014-05-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 成熟細胞の細胞特異的遺伝子gene body領域における能動的DNA脱メチル化分子機構の関与2014

    • Author(s)
      小田真由美
    • Organizer
      第8回日本エピジェネティクス研究会年会
    • Place of Presentation
      伊東国際学術研究センター(東京都)
    • Related Report
      2013 Research-status Report
  • [Presentation] DNAメチル化エピゲノム解析によるアクセシビリティ調節と細胞特異的遺伝子発現の効率化2013

    • Author(s)
      小田真由美
    • Organizer
      第7回日本エピジェネティクス研究会年会
    • Place of Presentation
      奈良県新公会堂(奈良県)
    • Related Report
      2013 Research-status Report
  • [Presentation] DNAメチル化エピゲノム解析による哺乳類gene body DNAメチル化の成り立ちと転写の関係2013

    • Author(s)
      小田真由美
    • Organizer
      NGS現場の会 第三回研究会
    • Place of Presentation
      神戸国際会議場(兵庫県)
    • Related Report
      2013 Research-status Report
  • [Remarks] 慶應義塾坂口光洋記念講座 坂口テニュアトラック・プログラム

    • URL

      http://www.careerpath-prj.keio.ac.jp/sakaguchi/scholar/m_oda/

    • Related Report
      2013 Research-status Report
  • [Remarks] 小田真由美 - 研究者 - researchmap

    • URL

      http://researchmap.jp/odamame/

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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