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Analysis of photohydration of pyrimidines in DNA and RNA

Research Project

Project/Area Number 25670064
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Environmental and hygienic pharmacy
Research InstitutionNihon Pharmaceutical University

Principal Investigator

Negishi Kazuo  日本薬科大学, 薬学部, 教授 (70116490)

Co-Investigator(Kenkyū-buntansha) KIMURA MICHIO  日本薬科大学, 薬学部, 准教授 (50349578)
NEGISHI TOMOE  岡山大学, 医歯薬総合研究科, 准教授 (80116491)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsUV / TOF-MS / 重水素置換 / DNA / RNA / 紫外線 / 水付加 / DNA損傷 / RNA損傷 / 質量分析 / リン酸イオン / 自己修復 / 紫外線損傷 / RNA合成 / ピリミジン
Outline of Final Research Achievements

It is well known that pyrimidines are readily hydrated upon irradiation by UV. However, its significance in UV toxicity and mutagenicity is still unclear. Among DNA components, cytosines are photohydrated efficiently, while thymine is relatively resistant to the hydration. Because this reaction is reversible and hydrated cytosines are unstable, it is not easy to measure levels of hydration in DNA. We have tried to estimate the hydration by using hydrogen-exchange at 5-position of cytosine. As a model compound, oligonucleotides containing deoxycytidine was employed to study the hydrogen-deuterium exchange. The UV-irradiated sample is dissolved with H2O, and analyzed. We found that the deuterium exchange can be monitored by MALDI-TOF MS as well as NMR measurement. The MS measurement is much easier than NMR, and suitable for multiple analyses. Another aspect is an effect of cellular components on the photohydration. Phosphate can catalyze dehydration from deoxycytidine hydrate.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (9 results)

All 2016 2015 2014 2013

All Journal Article (4 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Sustained Neutrophilic Effects of a Novel G-CSF Preparation: Protein-Zinc-Carbonate Complexes2016

    • Author(s)
      Michio Kimura, Tomoko Eto, Nobuo Izimo, and Yutaka Mizushima
    • Journal Title

      日本薬科大学教育紀要

      Volume: 2 Pages: 53-63

    • NAID

      40021217102

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Somatic-cell mutation induced by short exposures to cigarette smoke in urate-null, oxidative stress-sensitive Drosophila2015

    • Author(s)
      Uchiyama, T., Koike, R., Yuma, Y., Okamoto, K., Arimoto-Kobayashi, S., Suzuki, T., Negishi, T.,
    • Journal Title

      Mutagenesis

      Volume: 31 Pages: 9-15

    • DOI

      10.1093/mutage/gev051

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 重亜硫酸イオンによる 5-メチルデオキシシチジン脱アミノ反応におよぼす重水の影響について. Bisulfite sequencing 法改良の試み2015

    • Author(s)
      木島大貴、早津彦哉、綿矢有佑、木村道夫、根岸和雄
    • Journal Title

      日本薬科大学教育紀要

      Volume: 1 Pages: 88-92

    • NAID

      40021202674

    • Related Report
      2014 Research-status Report
    • Open Access / Acknowledgement Compliant
  • [Journal Article] Somatic cell mutations caused by 365-nm LED-UVA due to DNA double-strand breaks through oxidative damage2014

    • Author(s)
      Xing Fang, Naohiko Ide, Sho-ichi Higashi, Yasuhiro Kamei, Tatsushi Toyooka, Yuko Ibuki, Kazuaki Kasai, Keisuke Okamoto, Sakae Arimoto,-Kobayashi, Tomoe Negishi
    • Journal Title

      Photochem. Photobiol. Sci.

      Volume: 13 Pages: 1338-1346

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] DNA damage induced by 365 nm-UVA irradiation2015

    • Author(s)
      omoe Negishi, Fang Xing, Manami Iwasaki, Yasuhiro Kamei, Yuko Ibuki, Tsukasa Matsunaga
    • Organizer
      7th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2015-11-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ピリミジン光水和物について2015

    • Author(s)
      根岸和雄、根岸友恵
    • Organizer
      第37回日本光医学・光生物学会
    • Place of Presentation
      宮崎市
    • Year and Date
      2015-07-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] LED-UVAにより誘導されるDNA傷害2015

    • Author(s)
      根岸友惠、樊星、鈴木利典、亀井保博、伊吹裕子
    • Organizer
      第37回日本光医学・光生物学会
    • Place of Presentation
      宮崎市
    • Year and Date
      2015-07-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] デオキシシチジン光水和物の研究 -水脱離のリン酸イオンによる促進-2014

    • Author(s)
      根岸和雄、中岡聡子、河野健吾、和田一幸
    • Organizer
      日本薬学会第134回年会
    • Place of Presentation
      熊本
    • Related Report
      2013 Research-status Report
  • [Presentation] シトシンの光水酸化について -ジピリミジン以外のUV損傷の重要性を考える-2013

    • Author(s)
      千原彬美、押元志帆、中岡聡子、木村道夫、根岸和雄
    • Organizer
      日本環境変異原学会第42回大会
    • Place of Presentation
      岡山
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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