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Development of the DXT method by Photolithography

Research Project

Project/Area Number 25670107
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field General physiology
Research InstitutionUniversity of Fukui

Principal Investigator

SHIMIZU Hirofumi  福井大学, 医学部, 講師 (50324158)

Co-Investigator(Kenkyū-buntansha) HIRAI Yoshikazu  京都大学, 大学院工学系研究科, 助教 (40452271)
Co-Investigator(Renkei-kenkyūsha) TABATA Osamu  京都大学, 大学院工学系研究科, 教授 (20288624)
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsSingle molecule / Ion channel protein / dynamics / 1分子計測 / イオンチャネル / 蛋白質 / MEMS
Outline of Final Research Achievements

In this project we developed the Diffracted Xray Tracking(DXT) method,which can measure single-molecule conformational changes of ion channel proteins, by applying the photolithography technique to a probe and a recording chamber. In the DXT method a gold nanocrystal was attached to an ion channel protein as a probe, and the diffraction spots from the nanocrystal was elicited by radiation of the synchrotron white xray. Tracking the motions on the detector plane can be translated into the protein motions. We found the methods for fabrications of the size-controlled probe in nano-meter scale and the recording chamber with low xray-scattering noise in micrometer scale by using photolithography technique.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (11 results)

All 2015 2014 2013 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (8 results) Remarks (1 results)

  • [Journal Article] pH-dependent promotion of phospholipid flip-flop by the KcsA potassium channel2015

    • Author(s)
      H. Nakao, K. Ikeda, M. Iwamoto, H. Shimizu, S. Oiki, Y. Ishihama, M. Nakano
    • Journal Title

      Biochim. Biophys. Acta-Biomembr.

      Volume: 1848 Issue: 1 Pages: 145-150

    • DOI

      10.1016/j.bbamem.2014.10.001

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Body on a Chip2013

    • Author(s)
      Ken-ichiro Kamei, Yoshikazu Hirai, Osamu Tabata
    • Journal Title

      IEEE Nanotechnology Magazine

      Volume: 7 Pages: 6-14

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Relationship between Structural Fluctuations and The Opening Conformational Changes of The KcsA Potassium Channel2015

    • Author(s)
      Hirofumi Shimizu, Masayuki Iwamoto, Yumiko Oota, Shigetoshi Oiki
    • Organizer
      第120回日本解剖学会総会 全国学術集会, 第92回日本生理学会
    • Place of Presentation
      神戸国際会議場・展示場
    • Year and Date
      2015-03-21 – 2015-03-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] The diffracted X-ray tracking method for recording the single-molecule conformational changes of the KcsA potassium channel in a sub-millisecond time resolution2014

    • Author(s)
      Hirofumi Shimizu, Masayuki Iwamoto, Yumiko Oota, Yoshikazu Hirai, Osamu Tabata, Shigetoshi Oiki
    • Organizer
      The 45th Natl Inst Physiol Sci (NIPS) International Symposium
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2014-11-25 – 2014-11-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] X線1分子動態計測法で用いる低ノイズ観測チャンバーの開発2014

    • Author(s)
      平井義和、田畑修、清水啓史
    • Organizer
      化学とマイクロ・ナノシステム学会 第30回研究会(CHEMINAS30)
    • Place of Presentation
      北海道大学フロンティア応用化学研究棟
    • Year and Date
      2014-10-02 – 2014-10-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Enhancement of Structural Fluctuations Prior to The Opening Conformational Changes of The KcsA Potassium Channel2014

    • Author(s)
      Hirofumi Shimizu, Masayuki Iwamoto, Yumiko Oota, Shigetoshi Oiki
    • Organizer
      第52回日本生物物理学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a method for measuring single-molecule motions of the KcsA potassium channel in a sub-millisecond time resolution2014

    • Author(s)
      Hirofumi Shimizu, Masayuki Iwamoto, Antoine Royant , David Von Stetten, Laurent Guerin, Michael Wulff , Shigetoshi Oiki
    • Organizer
      Single Protein Dynamics in Cellulo 2014: Spatio-Temporal, Structural and Quantitative Analyses
    • Place of Presentation
      OIST seaside house, Okinawa
    • Year and Date
      2014-04-21 – 2014-04-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a method for measuring single-molecule motions of the KcsA potassium channel in a sub-millisecond time resolution2014

    • Author(s)
      Hirofumi Shimizu , Masayuki Iwamoto , Antoine Royant, David Von Stetten, Laurent Guerin, Michael Wulff , Shigetoshi Oiki
    • Organizer
      Single Protein Dynamics in Cellulo 2014:Spatio-Temporal, Structural and Quantitative Analyses
    • Place of Presentation
      沖縄、OISTシーサイドハウス
    • Related Report
      2013 Research-status Report
  • [Presentation] 高時間分解能で蛋白質の分子揺らぎと構造変化を計測するためのX線1分子動態計測法の開発2013

    • Author(s)
      清水啓史、岩本真幸、老木成稔
    • Organizer
      日本生物物理学会
    • Place of Presentation
      京都、国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Microfluidic Cell Sorter for Photodynamic Urine Diagnosis2013

    • Author(s)
      D. Takagi, Y. Hirai, S. Anai, Y. Chihara, K. Fujimoto, T. Tsuchiya, Y. Hirao, O. Tabata
    • Organizer
      The 7th IEEE International Conference on Nano/Molecular Medicine and Engineering (IEEE-NANOMED 2013)
    • Place of Presentation
      Phuket, Thailand
    • Related Report
      2013 Research-status Report
  • [Remarks] イオンチャネル蛋白質1分子の動きを動画でとらえる ~X線1分子動態計測法の開発~

    • URL

      https://nanonet.go.jp/magazine

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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