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Application of text mining techniques and image analysis in pathology diagnosis

Research Project

Project/Area Number 25670180
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Human pathology
Research InstitutionKitasato University

Principal Investigator

HARA Atsuko  北里大学, 医学部, 講師 (10276123)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords病理診断 / テキストマイニング解析 / 画像解析 / 診断支援システム / テキスト解析 / 診断支援システム開発 / 病理診断報告書 / 組織標本 / テキストマイニング / 病理診断支援システム
Outline of Final Research Achievements

We have developed a pathological information data base system and a diagnostic processing model with the use of pathology reports and images of digitized specimens. We first described an algorithm to enable the numeric transformation of pathology reports using both text mining and statistical analysis. Then, pathological diagnosis supporting system was provided, containing, (1) extraction and representation of the similar archival report, (2) calculation of probabilities for possible diseases, (3) consistency verification between diagnosis and details of the reports. Images of digitized specimen were divided into many small images and Wavelet transformation was performed. They were taken as training data and identified by pattern recognition by the K-nearest neighbour method. The result of this identification was used as a feature vector for a specimen image. Similar images were retrieved by comparing the feature vectors of the targeted images and the specimen images in the database.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (6 results)

All 2014 2013

All Presentation (5 results) Patent(Industrial Property Rights) (1 results)

  • [Presentation] 病理診断における画像とテキストの解析2014

    • Author(s)
      原 敦子、石橋雄一
    • Organizer
      2014年度統計関連学会連合大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2014-09-04
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大容量病理画像データの解析と検索2014

    • Author(s)
      石橋雄一、原 敦子
    • Organizer
      第27回大規模データ科学に関する研究第1回研究集会
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2014-07-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] 病理診断におけるテキストマイニングの応用-報告書の医学的・論理学的矛盾や記載ミスチェックシステムの開発2014

    • Author(s)
      原 敦子、石橋雄一、三枝 信
    • Organizer
      第103回日本病理学会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2014-04-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] 病理診断におけるテキストマイニングの応用2013

    • Author(s)
      原 敦子
    • Organizer
      第27回日本計算機統計学会
    • Place of Presentation
      青森(弘前大学)
    • Related Report
      2013 Research-status Report
  • [Presentation] テキスト/画像情報による客観的病理診断のモデル化2013

    • Author(s)
      原 敦子
    • Organizer
      第102回日本病理学会
    • Place of Presentation
      札幌
    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] 病理診断報告書作成支援装置2013

    • Inventor(s)
      原 敦子・石橋雄一
    • Industrial Property Rights Holder
      原 敦子・石橋雄一
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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