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The integrated system with Tm mapping and the FCS-based NF-kB assay for sepsis patients

Research Project

Project/Area Number 25670268
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Laboratory medicine
Research InstitutionUniversity of Toyama

Principal Investigator

KITAJIMA Isao  富山大学, 大学院医学薬学研究部(医学), 教授 (50214797)

Co-Investigator(Kenkyū-buntansha) NIIMI Hideki  富山大学, 大学病院, 助教 (50401865)
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords感染症 / 微生物 / 敗血症 / 遺伝子検査 / 転写因子 / 1分子計測 / 一分子計測
Outline of Final Research Achievements

The earliest possible identification of pathogenic microorganisms is critical for selecting appropriate antimicrobial therapy. We developed a nested-PCR-based assay for detecting Mycoplasma and other bacteria in amniotic fluid samples using eukaryotic, thermostable DNA polymerase. Next, a "melting temperature (Tm) mapping method" was developed for identifying a broad range of bacteria. Employing primer sets for a 16S ribosomal gene, more than 100 bacterial species can be identified. Nuclear transcription factor-kappa B (NF-kB) activation plays a key role in the regulation of immune responses to inflammation. We developed an experimental apparatus for detection of NF-kB activation based on fluorescence correlation spectroscopy (FCS), which permits analysis of DNA-protein binding in the liquid phase. FCS was performed using the single-molecule fluorescence detention system. We have integrated Tm mapping and the FCS based NF-kB assay and are conducting clinical trials in sepsis patients.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (17 results)

All 2014 2013

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 2 results) Presentation (10 results) (of which Invited: 3 results)

  • [Journal Article] Post-maketing surveillance of thrombomodulin alfa, a novel drug for treatment of disseminated intravascular coagulation treatment- Safety and efficacy in 1,032 patients assosiated with hematologic malignancy2014

    • Author(s)
      Asakura H, Takahashi H, Matsushita T, Ninomya H, Honda G, Mimuro J, Eguchi Y, Kitajima I, Sakata Y
    • Journal Title

      Thromb Res.

      Volume: 133 Pages: 364-370

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thrombomodulin alfa treatment in patients with acute promyelocytic leukemia and disseminated intravascular coagulation: a retrospective analysis of a open label multicenter postmarketing surveillance study cohort.2014

    • Author(s)
      Mastusita T, Watanabe J, Honda G, Mimuro J, Tsuji H, Eguchi Y, Kitajima I, Sakata Y
    • Journal Title

      Thromb Res.

      Volume: 133 Pages: 772-781

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Post-marketing surveillance data of the thrombomodulin alfa: sub-analysis in patients with sepsis-induced disseminated intravascular coagulation.2014

    • Author(s)
      Eguchi Y, Gando S, Ishikura H, Saitoh D, Mimuro J, Takahashi H, Kitajima I, Tshuji H, Matsushita T, Tsujita R, Nagao O, Sakata Y
    • Journal Title

      Journal of Intensive Care.

      Volume: 2 Pages: 30-30

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Post-marketing surveillance of thrombomodulin alfa, a novel treatment of disseminated intravascular coagulation - Safety and efficacy in 1,032 patients with hematologic malignancy2014

    • Author(s)
      Asakura H, Takahashi H, Tsuji H, Matsushita T, Ninomiya H, Honda G, Mimuro J, Eguchi Y, Kitajima I, Sakata Y
    • Journal Title

      Thromb Res

      Volume: 133 Issue: 3 Pages: 364-370

    • DOI

      10.1016/j.thromres.2013.12.033

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] N-terminal pro-Brain Natriuretic Peptide as a Predictor of Reoperation in Children With Surgically Corrected Tetralogy of Fallot2014

    • Author(s)
      Hirono K1, Sekine M, Shiba N, Hayashi S, Nakaoka H, Ibuki K, Saito K, Watanabe K, Ozawa S, Higuma T, Yoshimura N, Kitajima I, Ichida F.
    • Journal Title

      Circ J

      Volume: 78(3) Pages: 693-700

    • NAID

      130003382234

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A rapid and high-throughput quantitation assay of the nuclear factor κB activity using fluorescence correlation spectroscopy in the setting of clinical laboratories.2013

    • Author(s)
      Harada K, Mikuni S, Beppu H, Niimi H, Abe S, Hano N, Yamagata K, Kinjo M, Kitajima I.
    • Journal Title

      PLoS One

      Volume: 8 Issue: 10 Pages: e75579-e75579

    • DOI

      10.1371/journal.pone.0075579

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distinct reactivity of the commercially available monoclonal antibodies of D-dimer and plasma FDP testing to the molecular variants of fibrin degradation products.2013

    • Author(s)
      Madoiwa S, Kitajima I, Ohmori T, Sakata Y, Mimuro J.
    • Journal Title

      Thromb Res.

      Volume: 132 Issue: 4 Pages: 457-464

    • DOI

      10.1016/j.thromres.2013.08.006

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Tm mapping法(感染症起炎菌迅速同定法)の院内試験運用とその評価2014

    • Author(s)
      仁井見英樹、上野智浩、森正之、多葉田誉、南洋、杉江和茂、齋藤滋、北島勲
    • Organizer
      第61回日本臨床検査医学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2014-11-20 – 2014-11-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] 感染症起炎菌迅速同定法(Tm mapping法)の学内試験運用における正確性の評価2014

    • Author(s)
      仁井見英樹、上野智浩、森正之、杉江和茂、北島勲
    • Organizer
      第54回日本臨床化学会年次学術集会
    • Place of Presentation
      東京
    • Year and Date
      2014-09-03 – 2014-09-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] The Tm mapping method. A noel rapid, easy, and cost-effective method that identifies unknown pathogenic microorganisms within 3 hours of patietnt sample collection.2014

    • Author(s)
      Niimi H, Kitajima I
    • Organizer
      Microbiology and Infectious Diseases Asia Congress. 2014
    • Place of Presentation
      シンガポール
    • Year and Date
      2014-06-10 – 2014-06-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A Novel Method That Enables Rapid Identification of Unknown Pathogenic Bacteria In Sepsis Within Three Hours of Whole Blood Collection.2014

    • Author(s)
      Niimi H, Ueno T, Hayashi S, Abe A, Tsurue T, Mori M, Tabata H, Minami H, Goto M, Saito S and Kitajima I. The Melting Temperature (Tm) Mapping Method:
    • Organizer
      ECCMID 2014
    • Place of Presentation
      バルセロナ
    • Year and Date
      2014-05-10 – 2014-05-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] I: The Melting Temperature (TM) Mapping Method: A Novel Method That Enables Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Patient Sample Collection.2014

    • Author(s)
      Niimi H, Ueno T, Kitajima I.
    • Organizer
      The 9th International Conference of Clinical Laboratory Automation and Robotics
    • Place of Presentation
      横浜
    • Year and Date
      2014-04-17 – 2014-04-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] Novel haemostatic biomarkers in acute cardioembolic stroke.2013

    • Author(s)
      Kitajima I, Hirano K, Tani M, Tanaka K
    • Organizer
      Novel haemostatic biomarkers in acute cardioembolic stroke, 2013 American Association for Clinical Chemistry Annaul Meeting,
    • Place of Presentation
      Houston, TX ,USA
    • Related Report
      2013 Research-status Report
  • [Presentation] A New rapid, easyand cost-effective method that identifies unknown pathogenic microorganisms within 3 hours from sample collection2013

    • Author(s)
      Niimi H, Ueno T, Hayashi S, Mori M, Tabata H, Minami H, Saito S, Kitajima
    • Organizer
      20th European Congress of Clinical Chemistry and Laboratory Medicine
    • Place of Presentation
      Milano、Itaria
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Thrombomodulin Alfa Treatment For Disseminated Intravascular Coagulation In Acute Promyelocytic Leukemia: A Retrospective Analysis Of The Open-Label, Multicenter Study Cohort.2013

    • Author(s)
      Matsushita T, Watanabe J, Goichi Honda, Mimuro J, Takahashi H, Tsuji H, Eguchi Y,, Kitajima I, Sakata Y.
    • Organizer
      55th American Society of Hematology Annual Meeting and Exposition
    • Place of Presentation
      New Orleans, LA, USA.
    • Related Report
      2013 Research-status Report
  • [Presentation] 血栓・止血分子マーカーの最前線2013

    • Author(s)
      北島勲
    • Organizer
      .第60回日本臨床検査医学会学術集会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Tm mappng法:検体採取3時間以内で不特定の起因菌を同定する迅速検査法2013

    • Author(s)
      仁井見英樹, 上野智浩, 森正之, 多葉田誉, 南洋, 北島勲.
    • Organizer
      第53回日本臨床化学会年次学術集会
    • Place of Presentation
      徳島
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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