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Novel diagnostic method for infectious disease using next generation sequencing

Research Project

Project/Area Number 25670468
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Infectious disease medicine
Research InstitutionUniversity of Miyazaki

Principal Investigator

GOTOH Yasuhiro  宮崎大学, 医学部, 助教 (20558358)

Co-Investigator(Renkei-kenkyūsha) HAYASHI Tetsuya  九州大学, 大学院医学研究院, 教授 (10173014)
OKAYAMA Akihiko  宮崎大学, 医学部, 教授 (70204047)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsメタゲノム / 感染症 / 未培養 / 病原微生物 / 感染症診断 / 次世代シーケンサ / 細菌
Outline of Final Research Achievements

In the diagnosis and treatment of infectious diseases, the time that required for identification of the pathogen from patients, directly faces to the problem of the starting point for appropriate treatment and affects on patient prognosis. The exhaustive detection method for pathogens using the next generation sequencers without cultivation for isolation was developed. In the case of analyses such as blood, the current DNA purification method contaminates the large amount of host-derived DNA. It interferes to get enough of the sequence information of the pathogen of interest. Therefore, we developed a DNA purification method and identification method for efficiently acquiring information of the pathogen.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (8 results)

All 2016 2015 2014

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (7 results)

  • [Journal Article] Genetic relatedness and virulence properties of enteropathogenic Escherichia coli strains of serotype O119:H6 expressing localized adherence or localized and aggregative adherence-like patterns on HeLa cells.2016

    • Author(s)
      Garcia BG, Ooka T, Gotoh Y, Vieira MA, Yamamoto D, Ogura Y, Girão DM, Sampaio SC, Melo AB, Irino K, Hayashi T, Gomes TA.
    • Journal Title

      Int J Med Microbiol.

      Volume: 27 Issue: 3 Pages: 152-164

    • DOI

      10.1016/j.ijmm.2016.02.008

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発:病原菌感染経路推測への応用2016

    • Author(s)
      吉村大、後藤恭宏、小椋義俊、林哲也、伊藤武彦
    • Organizer
      第89回日本細菌学会
    • Place of Presentation
      大阪
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 次世代シークエンサを用いた菌株間 SNP 検出における問題点と検出プロトコルの構築2016

    • Author(s)
      吉村大、後藤恭宏、小椋義俊、林哲也、伊藤武彦
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京
    • Year and Date
      2016-03-05
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高精度分子疫学解析による集団感染疑い事例の検討2015

    • Author(s)
      後藤恭宏、林哲也
    • Organizer
      第88回日本細菌学会総会
    • Place of Presentation
      岐阜
    • Year and Date
      2015-03-08
    • Related Report
      2014 Research-status Report
  • [Presentation] 動物とヒト由来のHelicobacter cinaediは系統が異なる2014

    • Author(s)
      熱田雄也、後藤恭宏、小椋義俊、谷口喬子、大岡唯祐、三澤尚明、林哲也
    • Organizer
      第67回日本細菌学会九州支部総会
    • Place of Presentation
      鹿児島
    • Year and Date
      2014-09-06
    • Related Report
      2014 Research-status Report
  • [Presentation] Whole genome sequencingにより実現した高精度分子疫学解析を用いたHelicobacter cinaedi院内感染事例の同定2014

    • Author(s)
      後藤恭宏
    • Organizer
      第67回日本細菌学会九州支部総会
    • Place of Presentation
      鹿児島
    • Year and Date
      2014-09-05
    • Related Report
      2014 Research-status Report
  • [Presentation] Whole genome sequencingを用いた分子疫学と、その臨床応用2014

    • Author(s)
      後藤恭宏、大岡唯祐、小椋義俊、林哲也、岡山昭彦、佐伯裕二、梅木一美、谷口喬子、三澤尚明
    • Organizer
      第32回宮崎感染症研究会
    • Place of Presentation
      宮崎
    • Related Report
      2013 Research-status Report
  • [Presentation] Whole Genome Shotgunを用いた病原菌に関する疫学研究のための解析手法の開発2014

    • Author(s)
      吉村大、後藤恭宏、小椋義俊、林哲也、伊藤武彦
    • Organizer
      第8回日本ゲノム微生物学会
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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