• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Sequence-based Cancer-stromal Interactome Analysis for Accessible Therapeutic Targets

Research Project

Project/Area Number 25710020
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Medical genome science
Research InstitutionTokyo Medical and Dental University

Principal Investigator

SHUMPEI ISHIKAWA  東京医科歯科大学, 難治疾患研究所, 教授 (50418638)

Co-Investigator(Renkei-kenkyūsha) NAKAMURA Masato  東海大学, 医学科基盤診療学系, 教授 (00164335)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2015: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2014: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Fiscal Year 2013: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Keywordsゲノム / がん / 治療標的 / 癌 / 病理学
Outline of Final Research Achievements

We established the method of analyzing the entire cancer cell-stromal cell interaction (interactome) from the transcriptome sequence data of cancer xenograft tissues, by accurate separation of human and mouse sequence. Using this method, we analyzes the xenograft established from various type of cancer cells and clinical cancer tissues. We successfully confirmed that the interactome profile well reflects the actual histology of the cancer, and identified the candidate important interactions in a particular cancer subtype. For some of candidate molecules we could confirmed their tumor-specific and stroma-specific localization in actual clinical cancer tissues.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (13 results)

All 2015 2014 2013 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] The role of HGF/MET and FGF/FGFR in fibroblast-derived growth stimulation and lapatinib-resistance of esophageal squamous cell carcinoma2015

    • Author(s)
      Shin Saito, Kazue Morishima, Takashi Ui, Hiroko Hoshino, Daisuke Matsubara, Shumpei Ishikawa, Hiroyuki Aburatani, Masashi Fukayama, Yoshinori Hosoya, Naohiro Sato, Alan K Lefor, Yoshikazu Yasuda and Toshiro Niki
    • Journal Title

      BMC cancer

      Volume: 15 Issue: 1 Pages: 1-12

    • DOI

      10.1186/s12885-015-1065-8

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] がんと間質のインタラクトーム解析2014

    • Author(s)
      石川俊平
    • Journal Title

      病理と臨床 ゲノム創薬と病理

      Volume: 32(8) Pages: 850-856

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Clinicopathological and prognostic significance of EZH2 expression in upper urinary tract carcinoma.2014

    • Author(s)
      Hayashi A, Morikawa T, Kawai T, Kume H, Ishikawa S, Homma Y, Fukayama M.
    • Journal Title

      Virchows Arch

      Volume: 464 Issue: 4 Pages: 463-471

    • DOI

      10.1007/s00428-014-1541-6

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Prognostic significance of CD204-positive macrophages in upper urinary tract cancer2014

    • Author(s)
      Ichimura T, Morikawa T, Kawai T, Nakagawa T, Matsushita H, Kakimi K, Kume H, Ishikawa S, Homma Y, Fukayama M.
    • Journal Title

      Ann Surg Oncol.

      Volume: 21 Issue: 6 Pages: 2105

    • DOI

      10.1245/s10434-014-3503-2

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Comprehensive analysis of tumor - stromal interactome2015

    • Author(s)
      D. Komura, T. Isagawa, R. Sato, K. Kishi, R. Suzuki, S. Ishikawa
    • Organizer
      CSH-ASIA/AACR JOINT MEETING: BIG DATA, COMPUTATION, AND SYSTEMS BIOLOGY IN CANCER
    • Place of Presentation
      Suzhou, China
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] シーケンシングによるがん間質間相 互作用の網羅的解析.2015

    • Author(s)
      砂河 孝行、河村 大輔、佐藤 玲子、 貴志 一樹、鈴木 良平、石川 俊平.
    • Organizer
      日本人類遺伝学会 第 60 回大会
    • Place of Presentation
      京王プラザ 東京
    • Year and Date
      2015-10-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Visualizing whole cancer-stromal interactome2014

    • Author(s)
      Kazuki Kishi, Daisuke Komura, Takayuki Isagawa, Shumpei Ishikawa
    • Organizer
      13th European Conference on Computational Biology
    • Place of Presentation
      Strasbourg, France
    • Year and Date
      2014-09-07 – 2014-09-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] がん治療標的探索のための細胞間相互作用のゲノミクス2013

    • Author(s)
      石川俊平、河村大輔、佐藤玲子、砂河孝行、加藤洋人、油谷浩幸。深山正久
    • Organizer
      第102回日本病理学会総会
    • Place of Presentation
      札幌(ロイトンホテル)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Systematic profiling of cancer-microenvironment interactome in cancer tissue2013

    • Author(s)
      Shumpei Ishikawa, Daisuke Komura, Ryohei Suzuki, Reiko Sato, Masashi Fukayama, Hiroyuki Aburatani
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Related Report
      2013 Annual Research Report
  • [Presentation] がんと間質の相互作用の包括的解析2013

    • Author(s)
      石川俊平、河村大輔、貴志一樹、佐藤玲子、砂河孝行、油谷浩幸
    • Organizer
      日本人類遺伝学会 第58回大会
    • Place of Presentation
      仙台(江陽グランドホテル)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Sequencing-base approach for cancer-sromal interaction2013

    • Author(s)
      Shumpei Ishikawa
    • Organizer
      2013SNUCRI Cancer Symposium: Innovative Approaches to Explore Novel Druggable Targets
    • Place of Presentation
      チェジュ(フェニックスアイランド)、韓国
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 東京医科歯科大学 ゲノム病理学分野 研究内容

    • URL

      http://www.tmd.ac.jp/gpat/research/index.html

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 研究室ホームページ

    • URL

      http://www.tmd.ac.jp/gpat/

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi