• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Extracting environment-independent cellular growth properties based on phenomenological growth laws

Research Project

Project/Area Number 25711008
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

Wakamoto Yuichi  東京大学, 大学院総合文化研究科, 准教授 (30517884)

Project Period (FY) 2013-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
Fiscal Year 2016: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2015: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥8,450,000 (Direct Cost: ¥6,500,000、Indirect Cost: ¥1,950,000)
Fiscal Year 2013: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
Keywords1細胞計測 / 細胞情報・動態 / 成長・分裂
Outline of Final Research Achievements

In this research project, we aimed to unravel the phenomenological laws that impose the constraints on growth and death of individual cells under constant culture conditions, using E. coli, S. pombe, and L1210 lymphocytic leukemia cells as model organisms. The study revealed the linear relation between the means and the variances of E. coli generation time, which might determine the maximum bound of growth rate of this organism in any constant environments. Long-term single-cell measurement of S. pombe revealed the linear relation between division rate and death rate in constant environments, which demonstrates the trade-off that faster growth is linked with even higher death rates at the single-cell level. We also developed a new microfluidic device for long-term single-cell measurements of L1210 cells.

Report

(6 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (45 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (3 results) Journal Article (14 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 9 results,  Open Access: 7 results,  Acknowledgement Compliant: 1 results) Presentation (23 results) (of which Int'l Joint Research: 6 results,  Invited: 21 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] ニューヨーク大学(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ニューヨーク大学(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] ニューヨーク大学(米国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Aging, mortality, and the fast growth trade-off of Schizosaccharomyses pombe2017

    • Author(s)
      Nakaoka, H., Wakamoto, Y.
    • Journal Title

      PLoS Biology

      Volume: 15 Issue: 6 Pages: e2001109-e2001109

    • DOI

      10.1371/journal.pbio.2001109

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Live fast, die fast principle in a single cell of fission yeast.2017

    • Author(s)
      Nakaoka, H.
    • Journal Title

      Microbial Cell

      Volume: 4 Issue: 9 Pages: 308-310

    • DOI

      10.15698/mic2017.09.591

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptomes and Raman spectra are linked linearly through a shared low-dimensional subspace2017

    • Author(s)
      Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
    • Journal Title

      bioRxiv

      Volume: NA Pages: 235580-235580

    • DOI

      10.1101/235580

    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] Measurement of Environmental Response and Selection at the Single-Cell Level2017

    • Author(s)
      中岡秀憲, 梅谷実樹, 若本祐一
    • Journal Title

      KAGAKU TO SEIBUTSU

      Volume: 55 Issue: 4 Pages: 263-268

    • DOI

      10.1271/kagakutoseibutsu.55.263

    • NAID

      130006516066

    • ISSN
      0453-073X, 1883-6852
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data2017

    • Author(s)
      T. Nozoe, E. Kussell, and Y. Wakamoto
    • Journal Title

      PLoS Genetics

      Volume: 13 Issue: 3 Pages: e1006653-e1006653

    • DOI

      10.1371/journal.pgen.1006653

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Microfluidic lighthouse: an omnidirectional gradient generator2016

    • Author(s)
      Akihiko Nakajima, Motohiko Ishida, Taihei Fujimori, Yuichi Wakamoto, Satoshi Sawai
    • Journal Title

      Lab on Chip

      Volume: 16(22) Issue: 22 Pages: 4382-4394

    • DOI

      10.1039/c6lc00898d

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Noise-driven growth rate gain in clonal cellular populations2016

    • Author(s)
      Hashimoto, M., Nozoe, T., Nakaoka, H., Okura, R., Akiyoshi, S., Kaneko, K., Kussell, E., Wakamoto, Y.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 113 Issue: 12 Pages: 3251-3256

    • DOI

      10.1073/pnas.1519412113

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bacterial autoimmunity due to a restriction-modification system2016

    • Author(s)
      Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., Guet, C. C.
    • Journal Title

      Current Biology

      Volume: 26 Issue: 3 Pages: 404-409

    • DOI

      10.1016/j.cub.2015.12.041

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 細胞表現型ゆらぎの適応的意義と1細胞統計2015

    • Author(s)
      若本祐一
    • Journal Title

      顕微鏡

      Volume: 50 Pages: 86-91

    • NAID

      130007701767

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 細胞集団の適応ダイナミクスと細胞状態のゆらぎ2014

    • Author(s)
      野添嵩、若本祐一
    • Journal Title

      生体の科学

      Volume: 65 Pages: 464-465

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Single-cell dynamics of the chromosome replication and cell division cycles in mycobacteria2013

    • Author(s)
      Santi, I., Dhar, N., Bousbaine, D., Wakamoto, Y., McKinney, J. D.
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 2470-2470

    • DOI

      10.1038/ncomms3470

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 「細胞の成長」が回路に組み込まれた幹細胞分化の転写制御2013

    • Author(s)
      若本祐一
    • Journal Title

      実験医学

      Volume: 31 Pages: 2597-2598

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 1細胞計測で明らかになる集団の増殖と適応2013

    • Author(s)
      野添嵩, 橋本幹弘, 若本祐一
    • Journal Title

      実験医学

      Volume: 31 Pages: 1209-1216

    • Related Report
      2013 Annual Research Report
  • [Journal Article] ネガティブフィードバックのトレードオフを回避するウイルスの発現制御回路2013

    • Author(s)
      若本祐一
    • Journal Title

      実験医学

      Volume: 31 Pages: 893-894

    • Related Report
      2013 Annual Research Report
  • [Presentation] Heterogeneous response of lymphocytic cells to Mitomycin-C revealed by microfluidic single-cell time-lapse microscopy2017

    • Author(s)
      Seita, A., Wakamoto, Y.
    • Organizer
      Single-Cell Biophysics: Measurement, Modulation, and Modeling
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Growth, Death, and Aging in Fission Yeast2017

    • Author(s)
      Nakaoka, H., Wakamoto, Y.
    • Organizer
      9th International Fission Yeast Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Unique single-cell histories that adapt to antibiotic stress2017

    • Author(s)
      若本 祐一
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター(宮城県仙台市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Constraints and limits in the growth of microbial cells2017

    • Author(s)
      Wakamoto, Y.
    • Organizer
      Physical Approaches for Growing and Evolving Population
    • Place of Presentation
      東京大学生産技術研究所(東京都目黒区)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Techniques for measuring and analyzing single-cell histories and lineage trees2016

    • Author(s)
      Wakamoto, Y.
    • Organizer
      日本顕微鏡学会第59回シンポジウム
    • Place of Presentation
      帝京平成大学池袋キャンパス(東京都豊島区)
    • Year and Date
      2016-11-18
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Single-cell dynamics leading to drug resistance acquisition2016

    • Author(s)
      Wakamoto, Y.
    • Organizer
      International Symposium on Universal Biology
    • Place of Presentation
      東京大学本郷キャンパス(東京都文京区)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Acquisition of drug resistance at the single-cell level2016

    • Author(s)
      Wakamoto, Y.
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ストレス環境に対する適応・順応を担う特殊細胞系列の解析2016

    • Author(s)
      若本 祐一
    • Organizer
      「細胞を創る」研究会9.0
    • Place of Presentation
      早稲田大学国際会議場(東京都新宿区)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Fitness and gene expression from the viewpoint of single-cell lineages2016

    • Author(s)
      Wakamoto, Y.
    • Organizer
      QBio NIG International Symposium
    • Place of Presentation
      東京大学生産技術研究所(東京都目黒区)
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] バクテリアの適応ダイナミクスの1細胞解析2016

    • Author(s)
      若本祐一
    • Organizer
      生命動態システム科学四拠点・CREST・PRESTO・QBiC合同シンポジウム「生命動態の分子メカニズムと数理」
    • Place of Presentation
      シェラトンホテル広島(広島県広島市)
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Growth and adaptation at the single-cell level2015

    • Author(s)
      Wakamoto, Y.
    • Organizer
      QBiC Symposium 2015: High-Dimensional Data for the Design Principles of Life
    • Place of Presentation
      理化学研究所生命システム研究センター(大阪府吹田市)
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞の増殖と死に見られる定量法則2015

    • Author(s)
      若本祐一
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 1細胞統計学 - 長期1細胞計測で得られるデータの特性とその解釈について2014

    • Author(s)
      若本祐一
    • Organizer
      日本顕微鏡学会研究会「単一菌体の時間的、空間的連続観察から得られる新知見」
    • Place of Presentation
      帝京平成大学(東京都豊島区)
    • Year and Date
      2014-11-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Single-cell analysis on microbial persistence and clonal proliferation2014

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      2nd Annual Single Cell and Transcriptomics Asia Congress
    • Place of Presentation
      Singapore EXPO (Singapore, Singapore)
    • Year and Date
      2014-10-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 1細胞計測技術を用いた細菌パーシスタンス現象とクローン増殖の解析2014

    • Author(s)
      若本祐一
    • Organizer
      ChemBioハイブリッドレクチャー
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2014-10-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Single-cell lineage statistics reveals fitness and selection strength for heterogeneous phenotypic states2014

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      BSJ2014
    • Place of Presentation
      札幌コンベンションセンター(北海道札幌市)
    • Year and Date
      2014-09-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Quantifying cost and benefit of heterogeneous phenotypic states in clonal populations using single-cell lineage trees and the associated dynamics2014

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      JSMB/SMB 2014 Osaka
    • Place of Presentation
      大阪国際会議場(大阪府大阪市)
    • Year and Date
      2014-07-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 細菌のパーシスタンス現象2014

    • Author(s)
      若本祐一
    • Organizer
      感染病態研究フロンティア
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2014-07-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 1細胞レベルの系統樹ビッグデータから解き明かす増殖法則2014

    • Author(s)
      若本祐一
    • Organizer
      2014年度人工知能学会全国大会
    • Place of Presentation
      ひめぎんホール(愛媛県松山市)
    • Year and Date
      2014-05-13
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 1細胞のゆらぎと歴史を測るマイクロデバイス

    • Author(s)
      若本祐一
    • Organizer
      第86回日本生化学会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 1細胞レベルの適応度ゆらぎと集団ダイナミクス

    • Author(s)
      若本祐一
    • Organizer
      定量生物の会第6回年会
    • Place of Presentation
      大阪大学(大阪府吹田市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 遺伝子発現ゆらぎとクローン細胞集団の適応

    • Author(s)
      若本祐一
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 細胞内部状態のゆらぎと集団の適応ダイナミクス

    • Author(s)
      若本祐一
    • Organizer
      数学協働プログラム「生命ダイナミックスの数理とその応用」
    • Place of Presentation
      東京大学(東京都目黒区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 若本研究室ホームページ

    • URL

      http://webpark1706.sakura.ne.jp

    • Related Report
      2017 Annual Research Report 2015 Annual Research Report
  • [Remarks] 若本研究室ホームページ/Research

    • URL

      http://webpark1706.sakura.ne.jp/research/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 若本研究室 トップ

    • URL

      http://park.itc.u-tokyo.ac.jp/wakamoto-lab/index_j.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 若本研究室HP 研究内容

    • URL

      http://park.itc.u-tokyo.ac.jp/wakamoto-lab/Research_j.html

    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] トランスクリプトーム推定装置およびトランスクリプトーム推定方法2017

    • Inventor(s)
      若本祐一、小林鉱石
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-234164
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi