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Comparative brain transcriptome and epigenome analyses deciphering molecular basis of humanness

Research Project

Project/Area Number 25711027
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Physical anthropology
Research InstitutionCenter for Novel Science Initatives, National Institutes of Natural Sciences

Principal Investigator

Go Yasuhiro  大学共同利用機関法人自然科学研究機構(新分野創成センター), 新分野創成センター, 特任准教授 (50377123)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥27,040,000 (Direct Cost: ¥20,800,000、Indirect Cost: ¥6,240,000)
Fiscal Year 2015: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2014: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2013: ¥14,300,000 (Direct Cost: ¥11,000,000、Indirect Cost: ¥3,300,000)
Keywordsゲノム / トランスクリプトーム / 霊長類 / 類人猿 / 脳 / 進化 / チンパンジー / メチル化 / エピゲノム
Outline of Final Research Achievements

Rapid growth in high-throughput genomic biology opens new directions for studies focusing on human evolution and search for the molecular basis of human uniqueness. One of such direction is neurogenomics, a discipline bordering functional genomics and neuroscience. Neurogenomics aims to uncover how the genome contributes to the structure and function of the nervous system. Here we investigated transcriptome features distinguishing human brain regions from those of non-human apes by using eight distinct brain regions. The results show extensive transcriptome divergence among species in all brain regions, as well as excess of human-specific transcriptome changes in all brain regions except hippocampus. Furthermore, we identified thousands of human-specific expression changes in particular regions, providing candidate genes potentially linked to the unique functions of human brain. Taken together, our analysis provides insights into the evolution of brain region functionality to humans.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (45 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (3 results) Journal Article (8 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 8 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (26 results) (of which Int'l Joint Research: 1 results,  Invited: 11 results) Book (1 results) Remarks (7 results)

  • [Int'l Joint Research] Chinese Academy of Sciences(China)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Max Planck Society/Heidelberg University(Germany)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] University of Lausanne/Swiss Institute of Bioinformatics(Switzerland)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] The life history of retrocopies illuminates the evolution of new mammalian genes.2016

    • Author(s)
      F. N. Carelli, T. Hayakawa, Y. Go, H. Imai, M. Warnefors and H. Kaessmann.
    • Journal Title

      Genome Research

      Volume: 26 Issue: 3 Pages: 301-314

    • DOI

      10.1101/gr.198473.115

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Rapid Expansion of Phenylthiocarbamide Non-Tasters among Japanese Macaques.2015

    • Author(s)
      Suzuki-Hashido, N., Hayakawa, T., Matsui, A., Go, Y., Ishimaru, Y., Misaka, T., Abe, K., Hirai, H., Satta, Y., and Imai, H.
    • Journal Title

      PLoS ONE

      Volume: 22 Issue: 7 Pages: e0132016-e0132016

    • DOI

      10.1371/journal.pone.0132016

    • NAID

      120005745670

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sporadic premature aging in a Japanese monkey: a primate model for progeria.2014

    • Author(s)
      T. Oishi, H. Imai, Y. Go, M. Imamura, H. Hirai, M. Takada
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 11 Pages: e111867-e111867

    • DOI

      10.1371/journal.pone.0111867

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Frequent expansions of the bitter taste receptor gene repertoire during evolution of mammals in the Euarchontoglires clade.2014

    • Author(s)
      Takashi Hayakawa, Nami Suzuki-Hashido, Atsushi Matsui, Yasuhiro Go
    • Journal Title

      Molecular Biology and Evolution

      Volume: 31 Issue: 8 Pages: 2018-2031

    • DOI

      10.1093/molbev/msu144

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Frequent expansions of the bitter taste receptor gene repertoire during evolution of mammals in the Euarchontoglires clade.2014

    • Author(s)
      Hayakawa T, Suzuki-Hashido N, Matsui A, Go Y.
    • Journal Title

      Molecular Biology and Evolution

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.2014

    • Author(s)
      Uesaka M, Nishimura O, Go Y, Nakashima K, Agata K, Imamura T.
    • Journal Title

      BMC Genomics

      Volume: 15 Issue: 1 Pages: 35-35

    • DOI

      10.1186/1471-2164-15-35

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression of taste signal transduction molecules in the caecum of common marmosets.2013

    • Author(s)
      Gonda S, Matsumura S, Saito S, Go Y, Imai H
    • Journal Title

      Biology Letters

      Volume: 9 Issue: 4 Pages: 20130409-20130409

    • DOI

      10.1098/rsbl.2013.0409

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regional DNA Methylation Differences between Humans and Chirnpanzees Are Associated with Genetic Changes, Transeriptional Divergence and Disease Genes2013

    • Author(s)
      福田 渓
    • Journal Title

      J. Hum, Genet

      Volume: 58 Issue: 7 Pages: 446-54

    • DOI

      10.1038/jhg.2013.55

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 霊長類における精神・神経疾患関連遺伝子解析と認知ゲノミクスの展望2016

    • Author(s)
      郷康広
    • Organizer
      京都大学霊長類研究所共同利用研究会「霊長類脳科学の新しい展開とゲノム科学との融合」
    • Place of Presentation
      京都大学霊長類研究所(愛知県・犬山市)
    • Year and Date
      2016-03-11
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] マーモセットにおける精神・神経疾患関連遺伝子多様性解析2016

    • Author(s)
      郷康広
    • Organizer
      第5回日本マーモセット研究会
    • Place of Presentation
      東京慈恵会医科大学(東京都・港区)
    • Year and Date
      2016-01-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ゲノムを通して我が身を知る:ヒトとサルの間にあるもの2015

    • Author(s)
      郷康広
    • Organizer
      第64回インシリコ・メガバンク研究会
    • Place of Presentation
      東北大学東北メディカル・メガバンク機構(宮城県・仙台市)
    • Year and Date
      2015-11-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Spatiotemporal gene expression trajectory in the human and non-human ape brains2015

    • Author(s)
      Yasuhiro Go, Qian Li, Shoji Tatsumoto, Philipp Khaitovich
    • Organizer
      Cold Spring Harbor Symposium ~Behavior & Neurogenetics of Nonhuman Primates
    • Place of Presentation
      Cold Spring Harbor, NY, USA
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヒト脳と類人猿脳における時空間的比較トランスクリプトーム解析2015

    • Author(s)
      辰本将司、郷康広、Qian Li、Liu He、大石高生、鵜殿俊史、重信秀治、柿田明美、那波宏之、Philipp Khaitovich
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学川内北キャンパス(宮城県・仙台市)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] チンパンジー親子トリオ全ゲノム解析による世代間直接変異率の推定および構造変化の同定2015

    • Author(s)
      郷康広、辰本将司、福多賢太郎、野口英樹、早川卓志、友永雅己、平井啓久、松沢哲郎、阿形清和、藤山秋佐夫
    • Organizer
      日本遺伝学会第87回大会
    • Place of Presentation
      東北大学川内北キャンパス(宮城県・仙台市)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ヒト脳と類人猿脳における時空間的比較トランスクリプトーム解析2015

    • Author(s)
      郷康広,Qian Li、Liu He、大石高生、鵜殿俊史、重信秀治、柿田明美、那波宏之、Philipp Khaitovich
    • Organizer
      第17回日本進化学会大会
    • Place of Presentation
      中央大学(東京都・文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] ヒト脳と類人猿脳における時空間的比較トランスクリプトーム解析2015

    • Author(s)
      郷康広,Qian Li、Liu He、大石高生、鵜殿俊史、重信秀治、柿田明美、那波宏之、Philipp Khaitovich
    • Organizer
      第31回日本霊長類学会学術大会
    • Place of Presentation
      京都大学百周年時計台記念館(京都府・京都市)
    • Year and Date
      2015-07-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] ヒト脳と類人猿脳における時空間的比較トランスクリプトーム解析2015

    • Author(s)
      郷康広,Qian Li、Liu He、大石高生、鵜殿俊史、重信秀治、柿田明美、那波宏之、Philipp Khaitovich
    • Organizer
      NGS現場の会第4回研究会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ゲノムを通して我が身を知る:ヒトとサルの間にあるもの2015

    • Author(s)
      郷康広
    • Organizer
      東北大学脳神経科学コアセミナー
    • Place of Presentation
      東北大学医学研究科(宮城県・仙台市)
    • Year and Date
      2015-05-22
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 霊長類における精神・神経疾患関連遺伝子解析の認知ゲノミクスの展望2015

    • Author(s)
      郷康広
    • Organizer
      京都大学霊長類研究所共同利用研究会 「霊長類脳科学の新しい展開とゲノム科学との融合」
    • Place of Presentation
      京都大学霊長類研究所(愛知県・犬山市)
    • Year and Date
      2015-03-13 – 2015-03-14
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ヒトを理解するための霊長類モデルの可能性 ゲノム・トランスリプトームからのアプローチ2015

    • Author(s)
      郷康広
    • Organizer
      日本顕微鏡学会 分子・細胞動態イメージング研究部会 CREST「生命動態」領域 共催ワークショップ
    • Place of Presentation
      東京大学医学研究科(東京都・文京区)
    • Year and Date
      2015-03-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Spatiotemporal gene expression trajectory in the human and non-human ape brains2015

    • Author(s)
      Yasuhiro Go, Liu He, Takao Oishi, Shuji Shigenobu, Akiyoshi Kakita, Hiroyuki Nawa, Philipp Khaitovich
    • Organizer
      生理学研究所ー新潟大学脳研究所合同シンポジウム
    • Place of Presentation
      新潟大学脳研究所(新潟県・新潟市)
    • Year and Date
      2015-03-04 – 2015-03-05
    • Related Report
      2014 Annual Research Report
  • [Presentation] マーモセットにおける精神・神経疾患関連遺伝子解析2015

    • Author(s)
      郷康広,臼井千夏,石川裕恵,辰本将司
    • Organizer
      第4回日本マーモセット研究会
    • Place of Presentation
      犬山国際観光センター(愛知県・犬山市)
    • Year and Date
      2015-01-22 – 2015-01-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] チンパンジー親子トリオ全ゲノム解析による世代間直接変異率の推定2014

    • Author(s)
      郷康広,辰本将司,福多賢太郎,野口英樹,友永雅己,平井啓久,松沢哲郎,阿形清和,藤山秋佐夫
    • Organizer
      日本遺伝学会第86回大会
    • Place of Presentation
      長浜バイオ大学(滋賀県・長浜市)
    • Year and Date
      2014-09-17 – 2014-09-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] Direct estimation of genome-wide mutation rate in a chimpanzee family trio by ultra deep whole genome sequencing2014

    • Author(s)
      Yasuhiro Go
    • Organizer
      Symposium of MHC evolution and Human evolution
    • Place of Presentation
      総合研究大学院大学(神奈川県・葉山町)
    • Year and Date
      2014-07-26 – 2014-07-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] チンパンジー親子トリオ全ゲノム解析による世代間直接変異率の推定2014

    • Author(s)
      郷康広,辰本将司,福多賢太郎,野口英樹,友永雅己,平井啓久,松沢哲郎,阿形清和,藤山秋佐夫
    • Organizer
      第30回日本霊長類学会大会
    • Place of Presentation
      大阪科学芸術センタービル(大阪府・大阪市)
    • Year and Date
      2014-07-04 – 2014-07-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 非侵襲糞サンプリングに基づくギニア・ボッソウの野生チンパンジーの全遺伝子配列解析2014

    • Author(s)
      早川卓志,岸田拓士,郷康広,川口恵理,会津智幸,石崎比奈子,豊田敦,藤山秋佐夫,松沢哲郎,阿形清和
    • Organizer
      第30回日本霊長類学会大会
    • Place of Presentation
      大阪科学芸術センタービル(大阪府・大阪市)
    • Year and Date
      2014-07-04 – 2014-07-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 大規模全ゲノムシーケンシングによるニホンザルの種特異的ゲノム情報の探索2014

    • Author(s)
      福多賢太郎,野口英樹,豊田敦,長田直樹,郷康広,石田貴文,伊佐正,藤山秋佐夫
    • Organizer
      第30回日本霊長類学会大会
    • Place of Presentation
      大阪科学芸術センタービル(大阪府・大阪市)
    • Year and Date
      2014-07-04 – 2014-07-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 霊長類認知ゲノミクスと精神・神経疾患をターゲットとした霊長類モデル動物の探索2014

    • Author(s)
      郷 康広
    • Organizer
      自然科学研究機構 新分野創成センターシンポジウム 「大規模脳神経回路機能マップのその先」
    • Place of Presentation
      星陵会館(東京都千代田区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] オス・メス間ゲノムコンフリクティングとその生物学的意義の解明2013

    • Author(s)
      郷 康広
    • Organizer
      新学術領域研究「ゲノム・遺伝子相関」班会議
    • Place of Presentation
      ANAクラウンプラザホテル神戸(神戸市中央区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Deep exome sequencing in macaque monkeys for the establishment of primate cognitive and psychiatric disease model.2013

    • Author(s)
      Yasuhiro Go, Atsushi Toyoda, Tomoyuki Aizu, Hiroo Imai, Hirohisa Hirai, Tetsuo Yamamori, Asao Fujiyama, Tadashi Isa
    • Organizer
      The 24th CDB meeting Genomics and Epigenomics with Deep Sequencing
    • Place of Presentation
      理化学研究所 発生・再生科学総合研究センター(神戸市中央区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Spatiotemporal gene expression trajectory in the human and non-human ape brains2013

    • Author(s)
      郷 康広、大石高生、重信秀治、柿田明美、那波宏之、Philipp Khaitovich
    • Organizer
      第3回NGS現場の会研究会
    • Place of Presentation
      神戸国際会議場(神戸市中央区)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Spatiotemporal gene expression trajectory in the human and non-human ape brains2013

    • Author(s)
      Yasuhiro Go
    • Organizer
      Cold Spring Harbor Symposium ~Behavior & Neurogenetics of Nonhuman Primates~
    • Place of Presentation
      Cold Spring Harbor, New York, US
    • Related Report
      2013 Annual Research Report
  • [Presentation] Spatio-temporal gene expression trajectory2013

    • Author(s)
      郷 康広
    • Organizer
      新学術領域研究「ゲノム・遺伝子相関」若手の会
    • Place of Presentation
      支笏湖休暇村(千歳市支笏湖温泉)
    • Related Report
      2013 Annual Research Report
  • [Presentation] ゲノムを通して我が身を知る~ヒトとサルの間にあるもの~2013

    • Author(s)
      郷 康広
    • Organizer
      東北大・生体生命工学研究会
    • Place of Presentation
      東北大学(仙台市青葉区)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] 最新 心理学事典2013

    • Author(s)
      藤永 保
    • Total Pages
      944
    • Publisher
      平凡社
    • Related Report
      2013 Annual Research Report
  • [Remarks] 自然科学研究機構新分野創成センターブレインサイエンス研究分野(郷研究室)のHP

    • URL

      http://cnsi.nins.jp/pcg/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 自然科学研究機構新分野創成センター活動報告書ダウンロードサイト

    • URL

      http://www.nins.jp/cnsi/download/index.php

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 自然科学研究機構生理学研究所認知行動発達機構研究部門(併任)のHP

    • URL

      http://www.nips.ac.jp/research/group/post-48/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 自然科学研究機構生理学研究所認知行動発達機構研究部門(併任)のHP

    • URL

      http://www.nips.ac.jp/research/researcher/special_assoc/post_106.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 郷康広個人のHP

    • URL

      https://sites.google.com/site/yasuhirogo/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 自然科学研究機構新分野創成センター活動報告書ダウンロードサイト

    • URL

      http://www.nins.jp/cnsi/download/index.php

    • Related Report
      2013 Annual Research Report
  • [Remarks] 郷康広個人のホームページ

    • URL

      https://sites.google.com/site/yasuhirogo/profile

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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