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Predictive fish habitat modelling using biotelemetry and computational intelligence

Research Project

Project/Area Number 25712026
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Rural environmental engineering/Planning
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Fukuda Shinji  東京農工大学, (連合)農学研究科(研究院), 助教 (70437771)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥13,780,000 (Direct Cost: ¥10,600,000、Indirect Cost: ¥3,180,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2013: ¥8,970,000 (Direct Cost: ¥6,900,000、Indirect Cost: ¥2,070,000)
Keywords生態影響解析 / 生態水理 / 環境保全 / 水域ネットワーク / 移動分散 / 生態系影響解析 / 生態系影響評価 / 生態工学 / 生息場モデル / バイオテレメトリー / 移動分散モデル
Outline of Final Research Achievements

This project aimed at the application of biotelemtry for fish tracking as well as advanced computational intelligence such as random forests and other machine learning methods for predictive habitat modelling. We established a 430-m study reach in a river flowing through agriculture-dominated landscape in Fukuoka, Japan. Totaled 40 fish individuals, consisted of 4 species, were used as test fish. We successfully obtained movement tracks based on which habitat analyses have been done to identify diurnal changes in spatial distribution of each individual. The high-resolution fish positioning can be used in a small river, contributing to a better understanding and assessment of aquatic ecosystems for sustainable development.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (47 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (3 results) Journal Article (11 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 11 results,  Acknowledgement Compliant: 4 results) Presentation (27 results) (of which Int'l Joint Research: 4 results,  Invited: 7 results) Remarks (6 results)

  • [Int'l Joint Research] Polytech University of Valencia(Spain)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Polytech University of Torino(Italy)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Ghent University(Belgium)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Assessment of depth measurement using an acoustic Doppler current profiler and a CTD profiler in a small river in Japan2016

    • Author(s)
      Fukuda, S., Hiramatsu, K., Harada, M.
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 9835 Pages: 308-316

    • DOI

      10.1007/978-3-319-43518-3_30

    • ISBN
      9783319435176, 9783319435183
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Random forests hydrodynamic flow classification in a vertical slot fishway using a bioinspired artificial lateral line probe2016

    • Author(s)
      Fukuda, S., Tuhtan, J.A., Fuentes-Perez, J.F., Schletterer, M., Kruusmaa, M.
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 9835 Pages: 297-307

    • DOI

      10.1007/978-3-319-43518-3_29

    • ISBN
      9783319435176, 9783319435183
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Data prevalence matters when assessing species’ responses using data-driven species distribution models2016

    • Author(s)
      Fukuda, S., De Baets, B.
    • Journal Title

      Ecological Informatics

      Volume: 32 Pages: 69-78

    • DOI

      10.1016/j.ecoinf.2016.01.005

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Comparing four methods for decision-tree induction: a case study on the invasive Iberian gudgeon (Gobio lozanoi; Doadrio & Madeira, 2004)2016

    • Author(s)
      Munoz-Mas, R., Fukuda, S., Vezza, P., Martinez-Capel, F.
    • Journal Title

      Ecological Informatics

      Volume: 34 Pages: 22-34

    • DOI

      10.1016/j.ecoinf.2016.04.011

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] エコインフォマティクス―データ駆動型モデルの生態学への応用―2015

    • Author(s)
      福田信二
    • Journal Title

      システム/制御/情報

      Volume: 59(10) Pages: 363-368

    • NAID

      110010010803

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Assessment of spatial habitat heterogeneity by coupling data-driven habitat suitability models with a 2D hydrodynamic model in small-scale streams2015

    • Author(s)
      Fukuda, S., Tanakura, T., Hiramatsu, K., Harada, M.
    • Journal Title

      Ecological Informatics

      Volume: 29 Pages: 147-155

    • DOI

      10.1016/j.ecoinf.2014.10.003

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 2 次元生態水理モデルによる環境修復効果の定量評価2015

    • Author(s)
      福田信二・棚倉大智・平松和昭・原田昌佳
    • Journal Title

      水土の知

      Volume: 83(3) Pages: 179-182

    • NAID

      130007967959

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Habitat prediction and knowledge extraction for spawning European grayling (Thymallus thymallus L.) using a broad range of species distribution models2013

    • Author(s)
      Shinji Fukuda, Bernard De Baets, Willem Waegeman, Jan Verwaeren and Ans M. Mouton
    • Journal Title

      Environmental Modelling & Software

      Volume: 47 Pages: 1-6

    • DOI

      10.1016/j.envsoft.2013.04.005

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Predicting potential hybridization between native and non-native Rhodeus ocellatus subspecies: the implications for conservation of a pure native population in northern Kyushu, Japan.2013

    • Author(s)
      Norio Onikura, Takuya Miyake, Jun Nakajima, Shinji Fukuda, Tomonori Kawamato, Koichi Kawamura
    • Journal Title

      Aquatic Invasions

      Volume: 8(2) Issue: 2 Pages: 219-229

    • DOI

      10.3391/ai.2013.8.2.09

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modelling the distribution of the pan-continental invasive fish Pseudorasbora parva based on landscape features in the northern Kyushu Island, Japan2013

    • Author(s)
      Fukuda S, De Baets B, Onikura N, Nakajima J, Mukai T, Mouton AM
    • Journal Title

      Aquatic Conservation: Marine and Freshwater Ecosystems

      Volume: 23巻 Issue: 6 Pages: 901-910

    • DOI

      10.1002/aqc.2336

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of data prevalence on species distribution modelling using a genetic Takagi-Sugeno fuzzy system2013

    • Author(s)
      Shinji Fukuda
    • Journal Title

      Proceedings of the SSCI 2013 GEFS

      Volume: なし Pages: 21-27

    • DOI

      10.1109/gefs.2013.6601051

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] 矢川における希少魚種および水生植物の流程分布と生態水理研究2017

    • Author(s)
      松澤優樹・青木興成・相原星哉・福田信二
    • Organizer
      淡水魚保全シンポジウム
    • Place of Presentation
      大原文化センター(千葉県いすみ市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 矢川におけるホトケドジョウの流程分布と生息環境条件の解明2016

    • Author(s)
      松澤優樹・福田信二
    • Organizer
      平成28年度農業農村工学会大会講演会
    • Place of Presentation
      江陽グランドホテル・ホテル法華クラブ仙台・ハーネル仙台(宮城県仙台市)
    • Year and Date
      2016-08-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Assessment of depth measurement using an acoustic Doppler current profiler and a CTD profiler in a small river in Japan2016

    • Author(s)
      Fukuda,S., Hiramatsu, K., Harada, M.
    • Organizer
      9th International Conference on Intelligent Robotics and Applications
    • Place of Presentation
      Tokyo Metropolitan University (Tokyo, Japan)
    • Year and Date
      2016-08-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The use of acoustic Doppler current profiler data for microhabitat modelling in a small-scale stream2016

    • Author(s)
      Fukuda, S., Ohira, M.
    • Organizer
      11th International Symposium on Ecohydraulics
    • Place of Presentation
      Melbourne Cricket Ground (Melbourne, Australia)
    • Year and Date
      2016-02-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Using structure from motion techniques to describe and evaluate instream physical habitat2016

    • Author(s)
      Vezza, P., Astegiano, L., Fukuda, S., Comoglio, C., Lingua, A., Palau-Salvador, G.
    • Organizer
      11th International Symposium on Ecohydraulics
    • Place of Presentation
      Melbourne Cricket Ground (Melbourne, Australia)
    • Year and Date
      2016-02-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 臨界遊泳速度に基づくホトケドジョウの生息環境条件の解明2016

    • Author(s)
      松澤優樹・青木興成・福田信二
    • Organizer
      平成28年度農業農村工学会応用水理研究部会講演会
    • Place of Presentation
      岐阜市文化センター(岐阜県岐阜市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 府中用水における流況および魚類相の季節変化に関する報告2016

    • Author(s)
      福田信二
    • Organizer
      平成28年度農業農村工学会応用水理研究部会講演会
    • Place of Presentation
      岐阜市文化センター(岐阜県岐阜市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Biodiversity and Ecosystem Services in a Community2015

    • Author(s)
      Fukuda, S.
    • Organizer
      International Workshop on Community Centric Systems (IWCcS2015)
    • Place of Presentation
      首都大学東京(東京都日野市)
    • Year and Date
      2015-11-30
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 現役テニュアトラック教員による分野横断研究紹介2015

    • Author(s)
      福田信二
    • Organizer
      第3回テニュアトラック教員による創発型シンポジウム
    • Place of Presentation
      名古屋工業大学(愛知県名古屋市)
    • Year and Date
      2015-11-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 先進的計測技術を援用した生態水理学研究2015

    • Author(s)
      福田信二
    • Organizer
      名工大水関連研究室合同セミナー
    • Place of Presentation
      名古屋工業大学(愛知県名古屋市)
    • Year and Date
      2015-11-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 超音波多層流向流速計を用いた農業水路におけるマイクロハビタット調査2015

    • Author(s)
      福田信二・大平充
    • Organizer
      平成27年度農業農村工学会大会講演会
    • Place of Presentation
      岡山大学(岡山県岡山市)
    • Year and Date
      2015-09-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 季節的な流況の変化に対する魚類群集の応答に関する基礎調査2015

    • Author(s)
      大平充・福田信二
    • Organizer
      平成27年度農業農村工学会大会講演会
    • Place of Presentation
      岡山大学(岡山県岡山市)
    • Year and Date
      2015-09-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Data-driven modelling for agricultural sciences2015

    • Author(s)
      Fukuda, S.,
    • Organizer
      1st International Conference on Asian Highland Natural Resources Management (AsiaHiLand 2015)
    • Place of Presentation
      The Empress Hotel, Chiang Mai, Thailand
    • Year and Date
      2015-01-07 – 2015-01-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 小規模水域における淡水魚類のマイクロハビタット評価への先進的調査機器の適用2014

    • Author(s)
      福田信二
    • Organizer
      第1回 東京海洋大学テニュアトラック教員企画による異分野交流ミニシンポジウム-生命科学の謎を解き明かす-
    • Place of Presentation
      東京海洋大学(東京都港区)
    • Year and Date
      2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Does data prevalence matter when modelling habitat suitability using data-driven species distribution models?2014

    • Author(s)
      Fukuda, S.,
    • Organizer
      8th European Conference on Ecological Modelling (ECEM2014)
    • Place of Presentation
      Cadi Ayyad University, Marrakech, Morocco
    • Year and Date
      2014-10-27 – 2014-10-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] 小規模河川におけるマイクロハビタット調査への超音波テレメトリーの適用可能性の評価2014

    • Author(s)
      福田信二・原田昌佳・平松和昭
    • Organizer
      平成26年度日本水産学会秋季大会
    • Place of Presentation
      九州大学(福岡市)
    • Year and Date
      2014-09-19 – 2014-09-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 2 次元生態水理モデルによる魚類生息環境の多様度評価2014

    • Author(s)
      福田信二・棚倉大智・平松和昭・原田昌佳
    • Organizer
      平成26年度農業農村工学会大会講演会
    • Place of Presentation
      新潟コンベンションセンター 朱鷺メッセ(新潟市)
    • Year and Date
      2014-08-26 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Application of ultrasonic telemetry for habitat suitability assessment of freshwater fish: A case study in a small river in Japan2014

    • Author(s)
      Fukuda, S., Tanaka, K., Hanada, M., Harada, M., Hiramatsu, K.
    • Organizer
      10th International Symposium on Ecohydraulics (ISE2014)
    • Place of Presentation
      Norwegian University of Science and Technology, Trondheim, Norway
    • Year and Date
      2014-04-23 – 2014-04-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] ランダムフォレストによる生息場モデリングにおける初期値依存性の影響2013

    • Author(s)
      福田 信二・山口 真理恵・鬼倉 徳雄・中島 淳・平松 和昭・原田 昌佳
    • Organizer
      平成25年度農業農村工学会大会講演会講演要旨集
    • Place of Presentation
      東京都世田谷区
    • Related Report
      2013 Annual Research Report
  • [Presentation] Modelling the distribution of the invasive fish Pseudorasbora parva in lowland river systems2013

    • Author(s)
      Ans Mouton, Hugo Verreycken, Shinji Fukuda, Tim Adriaens and Johan Coeck
    • Organizer
      International Conference on Ecological Modelling (ISEM2013)
    • Place of Presentation
      Toulouse, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] Application of Random Forests for assessing the invasion risk by the non-native rosy bittering subspecies Rhodeus ocellatus ocellatus in northern Kyushu, Japan2013

    • Author(s)
      Shinji Fukuda, Marie Yamaguchi, Norio Onikura, Jun Nakajima, Masayoshi Harada, and Kazuaki Hiramatsu
    • Organizer
      International Conference on Ecological Modelling (ISEM2013)
    • Place of Presentation
      Toulouse, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] How to deal with input data characteristics in data-driven aquatic species distribution modelling―in search of an optimal cross‐validation2013

    • Author(s)
      Shinji Fukuda, Ester Julia Olaya-Marin, Francisco Martinez-Capel, and Ans M. Mouton
    • Organizer
      International Conference on Ecological Modelling (ISEM2013)
    • Place of Presentation
      Toulouse, France
    • Related Report
      2013 Annual Research Report
  • [Presentation] ランダムフォレストを用いたタイリクバラタナゴと在来タナゴ類の共存パターン解析2013

    • Author(s)
      福田 信二・山口 真理恵・鬼倉 徳雄・平松 和昭・原田 昌佳・中島 淳
    • Organizer
      応用生態工学会 第17回大阪大会
    • Place of Presentation
      大阪府大阪市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 空間分布モデリングにおける生物分布データの質的要素の影響に関する一考察2013

    • Author(s)
      福田 信二・平松 和昭・原田 昌佳
    • Organizer
      応用生態工学会福岡2013(第3回九州地区事例発会)
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 機械学習を援用した2次元生態水理モデルによるメダカの微生息環境評価2013

    • Author(s)
      棚倉 大智・福田 信二・平松 和昭・原田 昌佳
    • Organizer
      応用生態工学会福岡2013(第3回九州地区事例発会)
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2013 Annual Research Report
  • [Presentation] ランダムフォレストを用いた九州北部のタナゴ類の生息環境評価2013

    • Author(s)
      福田 信二・山口 真理恵・鬼倉 徳雄・平松 和昭・原田 昌佳・中島 淳
    • Organizer
      2013年度魚類学会シンポジウム
    • Place of Presentation
      宮崎県宮崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Application of machine learning methods to habitat suitability modelling for freshwater fish2013

    • Author(s)
      Shinji Fukuda
    • Organizer
      WaterEco2013
    • Place of Presentation
      Seoul, South Korea
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 研究者個人ホームページ

    • URL

      http://shinjifukuda-medaka.com/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 東京農工大学研究者プロフィール

    • URL

      http://kenkyu-web.tuat.ac.jp/Profiles/50/0004981/profile.html

    • Related Report
      2016 Annual Research Report 2014 Annual Research Report
  • [Remarks] 水資源計画学研究室ホームページ

    • URL

      http://shinjifukuda-medaka.com/

    • Related Report
      2015 Annual Research Report
  • [Remarks] 東京農工大学大学院農学研究院 水資源計画学研究室

    • URL

      http://shinjifukuda-medaka.com/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 所属機関・研究者情報(福田信二)

    • URL

      http://kenkyu-web.tuat.ac.jp/Profiles/50/0004981/profile.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] Google Scholar Citations (Shinji Fukuda)

    • URL

      http://scholar.google.com/citations?hl=en&user=n-DbjKgAAAAJ

    • Related Report
      2013 Annual Research Report

URL: 

Published: 2013-05-21   Modified: 2019-07-29  

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