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Study of Auto Quantum Chemical Calculation Method and Electron Structure Database for Proteins

Research Project

Project/Area Number 25730174
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionThe University of Tokyo

Principal Investigator

HIRANO Toshiyuki  東京大学, 生産技術研究所, 助教 (60451887)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords量子化学 / タンパク質 / 電子状態計算 / 電子構造 / 密度汎関数法 / 電子状態
Outline of Final Research Achievements

The electronic structure of proteins gives useful information in understanding its physical and reactive properties. In the electronic structure calculation of large molecules such as proteins, the modeling and single point calculation processes are complicated, so it is difficult to achieve. In this study, the programs that approximately automatically perform molecular modeling and the calculation of electronic structure have been developed. The developed programs have shown on the internet.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (10 results)

All 2015 2014 2013

All Journal Article (2 results) (of which Open Access: 1 results,  Peer Reviewed: 1 results) Presentation (8 results) (of which Invited: 1 results)

  • [Journal Article] QCLO法によるグルコースオキシダーゼ活性中心の電子状態計算2015

    • Author(s)
      吉田洵也, 平野敏行, 佐藤文俊
    • Journal Title

      生産研究

      Volume: 67 Pages: 61-61

    • NAID

      130005074271

    • Related Report
      2014 Annual Research Report
    • Open Access
  • [Journal Article] A third-generation density-functional-theory- based method for calculating canonical molecular orbitals of large molecules2014

    • Author(s)
      Toshiyuki Hirano and Fumotoshi Sato
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 未定 Issue: 28 Pages: 14496-14496

    • DOI

      10.1039/c3cp55514c

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 自由なフラグメント分割可能なQCLO法プログラムの開発2015

    • Author(s)
      平野敏行, 佐藤文俊
    • Organizer
      理論化学討論会
    • Place of Presentation
      大阪
    • Year and Date
      2015-05-20 – 2015-05-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a 3rd Gen DFT program: ProteinDF2014

    • Author(s)
      T. Hirano
    • Organizer
      4th International Workshop on Massively Parallel Programming Now - Toward post-K computers
    • Place of Presentation
      東京
    • Year and Date
      2014-11-24
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] グリッドフリー密度汎関数計算法の進展2014

    • Author(s)
      平野敏行, 佐藤文俊
    • Organizer
      分子科学討論会
    • Place of Presentation
      東広島
    • Year and Date
      2014-09-21 – 2014-09-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 次世代スーパーコンピュータに向けたタンパク質の電子状態シミュレーション2014

    • Author(s)
      平野敏行, 佐藤文俊
    • Organizer
      東京大学生命科学シンポジウム2014
    • Place of Presentation
      東京
    • Year and Date
      2014-04-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] ProteinDF: Application Program Designed to Perform All-electron Canonical Molecular Orbital Calculation of Macromolecule2013

    • Author(s)
      Toshiyuki Hirano, Fumitoshi Sato
    • Organizer
      International Symposium on Atomistic Modeling for Mechanics and Multiphysics of Materials (ISAM4)
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2013 Research-status Report
  • [Presentation] Development of the unbiased density functional method for massively parallel computing2013

    • Author(s)
      Toshiyuki Hirano, Fumitoshi Sato
    • Organizer
      15th International Conference on Density Functional Theory and its Applications
    • Place of Presentation
      Durham, UK
    • Related Report
      2013 Research-status Report
  • [Presentation] コレスキー分解を用いたグリッドフリー密度汎関数計算の研究2013

    • Author(s)
      平野 敏行, 樋口 恒, 佐藤 文俊
    • Organizer
      第7回分子科学討論会
    • Place of Presentation
      京都
    • Related Report
      2013 Research-status Report
  • [Presentation] 量子化学シミュレーションによるタンパク質電子構造の解明2013

    • Author(s)
      平野 敏行, 佐藤 文俊
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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