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Structral analysis of amphotericin B channel complex using solid-state NMR

Research Project

Project/Area Number 25750383
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biomolecular chemistry
Research InstitutionOsaka University

Principal Investigator

UMEGAWA Yuichi  大阪大学, 理学(系)研究科(研究院), 助教 (20587779)

Research Collaborator MURATA Michio  大阪大学, 理学研究科, 教授 (40183652)
MATSUMORI Nobuaki  九州大学, 理学研究院, 教授 (50314357)
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsアンフォテリシンB / リン脂質二重膜 / 固体NMR
Outline of Final Research Achievements

Sterol derivatives which have different side-chain or alicyclic structures were synthesized, and their affinities to amphotericin B (AmB) were evaluated by using ion-flux assay. The results indicated that face-face Van der Waals interactions stabilized the AmB-ergosterol complex. Solid-state NMR using fluorine 19 or carbon 13 labeled AmB and/or ergosterol were examined to obtain intermolecular distance information.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (11 results)

All 2015 2014 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (9 results) (of which Invited: 1 results)

  • [Journal Article] Axial Hydrogen at C7 Position and Bumpy Tetracyclic Core Markedly Reduce Sterol’s Affinity to Amphotericin B in Membrane2015

    • Author(s)
      Nakagawa, Y., Umegawa, Y., Nonomura, K., Matsushita, N., Takano, T., Tsuchikawa, H., Hanashima, S., Oishi, T., Matsumori, N., and Murata, M.
    • Journal Title

      Biochemistry

      Volume: 54 Issue: 2 Pages: 303-312

    • DOI

      10.1021/bi5012942

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Effect of sterol side chain on ion channel formation by amphotericin B in lipid bilayers.2014

    • Author(s)
      Nakagawa, Y., Umegawa, Y., Takano, T., Tsuchikawa, H., Matsumori, N., and Murata, M.
    • Journal Title

      Biochemistry

      Volume: 53 Issue: 19 Pages: 3088-3094

    • DOI

      10.1021/bi500122c

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] ポリオール部分の相互作用解析を目指した新規アンフォテリシンB誘導体の調製とイオンチャネル活性2015

    • Author(s)
      山本智也、梅川雄一、土川博史、花島慎弥、村田道雄、松森信明、Patrick Caffrey
    • Organizer
      日本化学会 第95春季年会
    • Place of Presentation
      日本大学
    • Year and Date
      2015-03-26 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] New synthetic route for labelled Amphotericin B derivative via β glycosidation2014

    • Author(s)
      Tomoya Yamamoto, Yuichi Uegawa, Hiroshi Tsuchikawa, Shinya Hanashima, Nobuaki Matsumori, Michio Murata
    • Organizer
      The 3rd International Symposium on Chemical Biology of Natural Products: Target ID and Regulation of Bioactivity
    • Place of Presentation
      千里ライフサイエンスセンター
    • Year and Date
      2014-10-28 – 2014-10-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Synthesis of deuterated Amphotericin B derivative via beta-glycosidation2014

    • Author(s)
      Tomoya Yamamoto, Yuichi Umegawa, Hiroshi Tsuchikawa, Shinya Hanashima, Nobuaki Matsumori, Michio Murata
    • Organizer
      Gordon Research Conference: Natural Product
    • Place of Presentation
      Andover, NH, USA
    • Year and Date
      2014-07-20 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Interactions of synthetic ergosterol analogues with amphotericin B toward understanding drug’s selective toxicity2014

    • Author(s)
      Yasuo Nakagawa, Yuichi Umegawa, Kenichi Nonomura, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata
    • Organizer
      15th Tetrahedron symposium
    • Place of Presentation
      London, UK
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report 2013 Research-status Report
  • [Presentation] 新規重水素化アンフォテリシンB誘導体の合成と固体NMRによる配向解析

    • Author(s)
      山本智也、梅川雄一、土川博史、花島慎弥、松森信明、村田道雄
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 分子間距離情報に基づく脂質二重膜に形成されるアンフォテリシンB複合体の構造解析

    • Author(s)
      中川泰男、野々村健一、梅川雄一、・土川博史、松森信明、村田道雄
    • Organizer
      日本化学会第94春季年会
    • Place of Presentation
      名古屋大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 固体NMRによる脂質二重膜中での複合体構造解析

    • Author(s)
      梅川雄一
    • Organizer
      「天然物ケミカルバイオロジー」第3回若手研究者ワークショップ
    • Place of Presentation
      東京
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Solid-state NMR based analysis of interaction between amphotericin B and ergosterol in lipid bilayer

    • Author(s)
      Yasuo Nakagawa, Yuichi Umegawa, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata
    • Organizer
      14th Tetrahedron symposium Asia edition
    • Place of Presentation
      Soul, Korea
    • Related Report
      2013 Research-status Report
  • [Presentation] Solid-state NMR-based structure elucidation of ion channel assembly formed by amphotericin B in lipid bilayers

    • Author(s)
      Yasuo Nakagawa, Yuichi Umegawa, Hiroshi Tsuchikawa, Nobuaki Matsumori, Michio Murata
    • Organizer
      3rd Junior International Conference on Cutting-Edge Organic Chemistry in Asia
    • Place of Presentation
      千葉
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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