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Nonequilibrium statistical-mechanical study of molecular machines with autonomous information processing

Research Project

Project/Area Number 25800217
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Mathematical physics/Fundamental condensed matter physics
Research InstitutionThe University of Tokyo

Principal Investigator

Sagawa Takahiro  東京大学, 工学(系)研究科(研究院), 准教授 (60610805)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsゆらぎの定理 / 情報熱力学 / シグナル伝達 / 熱力学第二法則
Outline of Final Research Achievements

The investigation of autonomous molecular machines attracts much interest not only in terms of nonequilibrium statistical mechanics but also quantitative biology. In this study, I focus on the role of autonomous information processing in molecular machines, and constructed a general thermodynamic theory of autonomous information processing. I have derived a generalized fluctuation theorem including information flow, which leads to the second law of thermodynamics with autonomous information processing. This has revealed the fundamental role of information flow in nonequilibrium statistical mechanics. Furthermore, I have applied the general theory to biochemical signal transduction, and found the relationship between information flow and robustness of adaptation of bacterial chemotaxis.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (47 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (19 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 19 results,  Open Access: 11 results,  Acknowledgement Compliant: 8 results) Presentation (23 results) (of which Int'l Joint Research: 6 results,  Invited: 19 results) Book (1 results) Remarks (3 results)

  • [Int'l Joint Research] アールト大学(フィンランド)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Thermodynamics of information exchange between two coupled quantum dots2016

    • Author(s)
      Aki Kutvonen, Takahiro Sagawa, and Tapio Ala-Nissila
    • Journal Title

      Phyical Review E

      Volume: 93 Issue: 3

    • DOI

      10.1103/physreve.93.032147

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Measurement-feedback formalism meets information reservoirs2016

    • Author(s)
      Naoto Shiraishi, Takumi Matsumoto, and Takahiro Sagawa
    • Journal Title

      New Journal of Physics

      Volume: 18 Issue: 1 Pages: 013044-013044

    • DOI

      10.1088/1367-2630/18/1/013044

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Maxwell's demon in biochemical signal transduction with feedback loop2015

    • Author(s)
      Sosuke Ito and Takahiro Sagawa
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 7498-7498

    • DOI

      10.1038/ncomms8498

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Asymptotic Derivation of Langevin-like Equation with Non-Gaussian Noise and Its Analytical Solution2015

    • Author(s)
      Kiyoshi Kanazawa, Tomohiko G. Sano, Takahiro Sagawa, and Hisao Hayakawa
    • Journal Title

      Journal of Statistical Physics

      Volume: 160 Issue: 5 Pages: 1294-1335

    • DOI

      10.1007/s10955-015-1286-x

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role of measurement-feedback separation in autonomous Maxwell's demons2015

    • Author(s)
      Shiraishi Naoto, Sosuke Ito, Kyogo Kawaguchi and Takahiro Sagawa
    • Journal Title

      New Journal of Physics

      Volume: 045012 Issue: 4 Pages: 045012-045012

    • DOI

      10.1088/1367-2630/17/4/045012

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Fluctuation theorem for partially masked nonequilibrium dynamics2015

    • Author(s)
      N. Shiraishi and T. Sagawa
    • Journal Title

      Physical Review E

      Volume: 91 Issue: 1 Pages: 012130-012130

    • DOI

      10.1103/physreve.91.012130

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thermodynamics of information2015

    • Author(s)
      Juan M. R. Parrondo, Jordan M. Horowitz, Takahiro Sagawa
    • Journal Title

      Nature Physics

      Volume: 11 Issue: 2 Pages: 131-139

    • DOI

      10.1038/nphys3230

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Minimal Model of Stochastic Athermal Systems: Origin of Non-Gaussian Noise2015

    • Author(s)
      K. Kanazawa, T.G. Sano, T. Sagawa, H. Hayakawa
    • Journal Title

      Physical Review Letters

      Volume: 114 Issue: 9 Pages: 090601-090606

    • DOI

      10.1103/physrevlett.114.090601

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Equivalent Definitions of the Quantum Nonadiabatic Entropy Production2014

    • Author(s)
      Jordan M. Horowitz, Takahiro Sagawa
    • Journal Title

      Journal of Statistical Physics

      Volume: 156 Pages: 5-65

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nonequilibrium dissipation-free transport in F1-ATPase and the thermodynamic role of asymmetric allosterism2014

    • Author(s)
      Kyogo Kawaguchi, Shin-ichi Sasa, and Takahiro Sagawa
    • Journal Title

      Biophysical Journal

      Volume: 106 Issue: 11 Pages: 2450-2457

    • DOI

      10.1016/j.bpj.2014.04.034

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Experimental Observation of the Role of Mutual Information in the Nonequilibrium Dynamics of a Maxwell Demon2014

    • Author(s)
      J. V. Koski, V. F. Maisi, T. Sagawa, J. P. Pekola
    • Journal Title

      Physical Review Letters

      Volume: 113 Issue: 3

    • DOI

      10.1103/physrevlett.113.030601

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Energy pumping in electrical circuits under avalanche noise2014

    • Author(s)
      K. Kanazawa, T. Sagawa, H. Hayakawa
    • Journal Title

      Physical Review E

      Volume: 90 Issue: 1 Pages: 012115-012122

    • DOI

      10.1103/physreve.90.012115

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Thermodynamic and Logical Reversibilities Revisited2014

    • Author(s)
      Takahiro Sagawa
    • Journal Title

      Journal of Statistical Mechanics

      Volume: 巻号表記無し Issue: 3 Pages: P03025-P03025

    • DOI

      10.1088/1742-5468/2014/03/p03025

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distribution of entropy production in a single-electron box2013

    • Author(s)
      J. V. Koski, T. Sagawa, O-P. Saira, Y. Yoon, A. Kutvonen, P. Solinas, M. Mottonen, T. Ala-Nissila, J. P. Pekola
    • Journal Title

      Nature Physics

      Volume: 9 Issue: 10 Pages: 644-648

    • DOI

      10.1038/nphys2711

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Geometrical excess entropy production in nonequilibrium quantum systems2013

    • Author(s)
      Tatsuro Yuge, Takahiro Sagawa, Ayumu Sugita, Hisao Hayakawa
    • Journal Title

      Journal of Statistical Physics

      Volume: 153 Issue: 3 Pages: 412-441

    • DOI

      10.1007/s10955-013-0829-2

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kim et al. Reply:2013

    • Author(s)
      Sang Wook Kim, Kang-Hwan Kim, Takahiro Sagawa, Simone De Liberato, Masahito Ueda
    • Journal Title

      Physical Review Letters

      Volume: 111 Issue: 18

    • DOI

      10.1103/physrevlett.111.188902

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Information Thermodynamics on Causal Networks2013

    • Author(s)
      Sosuke Ito, Takahiro Sagawa
    • Journal Title

      Physical Review Letters

      Volume: 111 Issue: 18

    • DOI

      10.1103/physrevlett.111.180603

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Heat Engine Driven by Purely Quantum Information2013

    • Author(s)
      Jung Jun Park, Kang-Hwan Kim, Takahiro Sagawa, Sang Wook Kim
    • Journal Title

      Physical Review Letters

      Volume: 111 Issue: 23

    • DOI

      10.1103/physrevlett.111.230402

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Role of mutual information in entropy production under information exchanges2013

    • Author(s)
      Takahiro Sagawa, Masahito Ueda
    • Journal Title

      New Journal of Physics

      Volume: 15 Issue: 12 Pages: 125012-125012

    • DOI

      10.1088/1367-2630/15/12/125012

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Nonequilibrium thermodynamics of quantum information2016

    • Author(s)
      T. Sagawa
    • Organizer
      UTokyo-ANU Workshop on Quantum Information and Control
    • Place of Presentation
      東京大学本郷キャンパス(東京都文京区)
    • Year and Date
      2016-03-09
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 熱的な量子純粋状態におけるゆらぎの定理2016

    • Author(s)
      沙川貴大
    • Organizer
      第4回統計物理学懇談会
    • Place of Presentation
      学習院大学(東京都豊島区)
    • Year and Date
      2016-03-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 熱的な量子純粋状態におけるゆらぎの定理2016

    • Author(s)
      沙川貴大
    • Organizer
      量子論の諸問題と今後の発展 (QMKEK6)
    • Place of Presentation
      高エネルギー加速器研究機構(KEK)(茨城県つくば市)
    • Year and Date
      2016-02-17
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Thermodynamics of information and its application to biological signal transduction2016

    • Author(s)
      T. Sagawa
    • Organizer
      Toyota Physical & Chemical Research Institute Workshop "Entropy, Information and Control"
    • Place of Presentation
      東京大学生産技術研究所(東京都目黒区)
    • Year and Date
      2016-01-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Thermodynamics of Autonomous Information Processing2015

    • Author(s)
      T. Sagawa
    • Organizer
      KIAS Workshop on Quantum Information and Thermodynamics
    • Place of Presentation
      Busan, Korea
    • Year and Date
      2015-11-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 情報熱力学の細胞内シグナル伝達への応用2015

    • Author(s)
      沙川貴大
    • Organizer
      山田研究会「生物と非生物をつなぐ」
    • Place of Presentation
      ラフォーレ修善寺(静岡県伊豆市)
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] hermodynamics of Autonomous Information Processing and its Application to Biological Signal Transduction2015

    • Author(s)
      T. Sagawa
    • Organizer
      International Symposium on Fluctuation and Structure out of Equilibrium 2015 (SFS2015)
    • Place of Presentation
      京都大学芝蘭会館稲盛ホール(京都府京都市)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Maxwell's Demon in Biochemical Signal Transduction2015

    • Author(s)
      T. Sagawa
    • Organizer
      New Frontiers in Non-equilibrium Physics 2015
    • Place of Presentation
      京都大学基礎物理学研究所(京都府京都市)
    • Year and Date
      2015-07-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nonequilibrium Thermodynamics of Quantum Information Processing2015

    • Author(s)
      T. Sagawa
    • Organizer
      The 10th Principles and Applications of Control in Quantum Systems Workshop 2015 (PRACQSYS 2015)
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2015-07-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 情報熱力学とその細胞内シグナル伝達への応用2015

    • Author(s)
      沙川貴大
    • Organizer
      新学術領域研究「ゆらぎと構造」第2回公開シンポジウム
    • Place of Presentation
      東京大学本郷キャンパス小柴ホール(東京都文京区)
    • Year and Date
      2015-05-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Thermodynamics of Nonequilibrium Systems with Feedback Control2015

    • Author(s)
      T. Sagawa
    • Organizer
      March Meeting 2015 of the American Physical Society (an invited session on "Thermodynamics of Information Processing")
    • Place of Presentation
      San Antonio, Texas, US
    • Year and Date
      2015-03-02 – 2015-03-06
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Fluctuation Theorem for Information Processing2015

    • Author(s)
      T. Sagawa
    • Organizer
      2015 Berkeley Mini Statistical Mechanics Meeting
    • Place of Presentation
      Berkeley, California, US
    • Year and Date
      2015-01-09 – 2015-01-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Nonequilibrium Thermodynamics of Quantum Information Processing2014

    • Author(s)
      T. Sagawa
    • Organizer
      Nonequilibrium Thermodynamics of Quantum Information Processing
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2014-12-03 – 2014-12-05
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Information Thermodynamics on Causal Networks2014

    • Author(s)
      T. Sagawa
    • Organizer
      Thermodynamics, Large deviation, and Transportation
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2014-09-17 – 2014-09-18
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Quantum-information thermodynamics2014

    • Author(s)
      T. Sagawa
    • Organizer
      YITP Workshop on Quantum Information Physics (YQIP2014)
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2014-08-04 – 2014-08-07
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Quantum-information thermodynamics2014

    • Author(s)
      T. Sagawa
    • Organizer
      YITP Workshop on Quantum Information Physics (YQIP2014)
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2014-07-08 – 2014-07-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 情報処理過程における熱力学第二法則2014

    • Author(s)
      沙川貴大
    • Organizer
      計測自動制御学会第一回制御部門マルチシンポジウム(MSCS2014)
    • Place of Presentation
      電気通信大学,東京
    • Related Report
      2013 Research-status Report
  • [Presentation] 情報交換プロセスにおけるゆらぎの定理2014

    • Author(s)
      沙川貴大
    • Organizer
      日本物理学会第69回年次大会 領域11・領域12合同シンポジウム
    • Place of Presentation
      東海大学,平塚
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Imitating Chemical Motors with Information Motors2013

    • Author(s)
      Takahiro Sagawa
    • Organizer
      2013 Taiwan International Workshop on Biophysics and Complex Systems
    • Place of Presentation
      Taipei, Taiwan
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Fluctuation theorem for information exchange2013

    • Author(s)
      Takahiro Sagawa
    • Organizer
      Statphys 25
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Second law of thermodynamics with the QC-mutual information2013

    • Author(s)
      Takahiro Sagawa
    • Organizer
      Summer Workshop on "Physics, Mathematics, And All That Quantum Jazz"
    • Place of Presentation
      Osaka, Japan
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Role of Mutual Information in Entropy Production under Information Exchanges2013

    • Author(s)
      Takahiro Sagawa
    • Organizer
      East Asia Joint Seminars on Statistical Physics (EAJS-SP2013)
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Fluctuation Theorem with Information Exchange2013

    • Author(s)
      Takahiro Sagawa
    • Organizer
      Solvay Workshop on "Thermodynamics of Small Systems"
    • Place of Presentation
      Brussels, Belgium
    • Related Report
      2013 Research-status Report
    • Invited
  • [Book] 量子測定と量子制御2016

    • Author(s)
      沙川貴大、上田正仁
    • Total Pages
      210
    • Publisher
      サイエンス社
    • Related Report
      2015 Annual Research Report
  • [Remarks] 沙川貴大のホームページ

    • URL

      http://www.taksagawa.com/

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
  • [Remarks] 沙川研究室

    • URL

      http://noneq.c.u-tokyo.ac.jp/

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
  • [Remarks] http://www.taksagawa.com/

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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