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Development of analysis methods for spin-orbit interactions in large-scale biomaterials

Research Project

Project/Area Number 25810015
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Physical chemistry
Research InstitutionNational Institute for Materials Science

Principal Investigator

NAKATA Ayako  独立行政法人物質・材料研究機構, 若手国際研究センター, NIMSポスドク研究員 (20595152)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords大規模計算 / 密度汎関数理論 / オーダーN計算 / 基底関数 / 生体分子 / スピン軌道相互作用
Outline of Final Research Achievements

The purpose of this research is to develop an efficient calculation method to analyze spin-orbit interactions in large systems such as biomolecules, based on large-scale density functional theory (DFT) calculations. Relativistic calculations including spin-orbit interactions are much more computational-cost consuming than usual non-relativistic calculations. Therefore, in this research, we have developed an efficient calculation method, which can contract primitive basis functions to be minimal while keeping the original accuracy, and succeeded in reducing the computational times of both closed- and open-shell calculations significantly.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (13 results)

All 2015 2014 2013 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Invited: 1 results)

  • [Journal Article] Optimized multi-site local orbitals in the large-scale DFT program CONQUEST2015

    • Author(s)
      A. Nakata, D. R. Bowler and T. Miyazaki
    • Journal Title

      Phys. Chem. Chem. Phys., published online

      Volume: - Issue: 47 Pages: 31427-31433

    • DOI

      10.1039/c5cp00934k

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Efficient Calculations with Multisite Local Orbitals in a Large-Scale DFT Code CONQUEST2014

    • Author(s)
      A. Nakata, D. R. Bowler and T. Miyazaki
    • Journal Title

      J. Chem. Theory Comput.

      Volume: 10 Issue: 11 Pages: 4813-4822

    • DOI

      10.1021/ct5004934

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Density functional theory for comprehensive orbital energy calculations2013

    • Author(s)
      A. Nakata and T. Tsuneda
    • Journal Title

      J. Chem. Phys.

      Volume: 139 Issue: 6 Pages: 64102-64102

    • DOI

      10.1063/1.4817404

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Analysis of one-electron wave functions of large-scale systems with O(N) DFT code CONQUEST and Sakurai-Sugiura method2015

    • Author(s)
      Ayako Nakata, David R. Bowler, Yasunori Futamura, Tetsuya Sakurai and Tsuyoshi Miyazaki
    • Organizer
      2015 SYMPOSIUM FOR THE PROMOTION OF APPLIED RESEARCH COLLABORATION IN ASIA
    • Place of Presentation
      台北市(台湾)
    • Year and Date
      2015-02-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Efficient optimization of local orbitals and eigenstate calculations in linear-scaling DFT code CONQUEST2015

    • Author(s)
      Ayako Nakata, David R. Bowler, Yasunori Futamura, Tetsuya Sakurai and Tsuyoshi Miyazaki
    • Organizer
      International Workshop on Computational Physics and Materials Science: Total Energy and Force Methods
    • Place of Presentation
      トリエステ市(イタリア)
    • Year and Date
      2015-01-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] Efficient optimization of local orbitals and eigenstate calculations in O(N) DFT code CONQUEST2014

    • Author(s)
      Ayako Nakata, David R. Bowler, Yasunori Futamura, Tetsuya Sakurai and Tsuyoshi Miyazaki
    • Organizer
      International Symposium on Computics: Quantum Simulation and Design
    • Place of Presentation
      東京大学本郷キャンパス(東京都文京区)
    • Year and Date
      2014-12-02
    • Related Report
      2014 Annual Research Report
  • [Presentation] Efficient Construction of Local Orbitals Basis Functions in Large-Scale DFT calculation code CONQUEST2014

    • Author(s)
      Ayako Nakata, D. R. Bowler and Tsuyoshi Miyazaki
    • Organizer
      Functionality of Organized Nanostructures 2014
    • Place of Presentation
      日本科学未来館(東京都江東区)
    • Year and Date
      2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] オーダーN法DFT計算プログラムCONQUESTにおける局在軌道の最適化と応用計算2014

    • Author(s)
      中田彩子, D. R. Bowler, 宮崎剛
    • Organizer
      第8回分子科学討論会
    • Place of Presentation
      広島大学東広島キャンパス(広島県東広島市)
    • Year and Date
      2014-09-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development and application of the optimization method for local orbitals in an O(N) DFT program CONQUEST2014

    • Author(s)
      Ayako Nakata, David Bowler and Tsuyoshi Miyazaki
    • Organizer
      Computational Science Workshop 2014
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2014-08-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 第一原理O(N)計算プログラムCONQUESTにおける局所軌道の最適化手法の開発

    • Author(s)
      中田彩子, Bowler David, 宮崎剛
    • Organizer
      第16回理論化学討論会
    • Place of Presentation
      福岡市健康づくりサポートセンター(福岡)
    • Related Report
      2013 Research-status Report
  • [Presentation] 内殻・価電子軌道エネルギーを定量的に与える理論

    • Author(s)
      常田貴夫, 中田彩子
    • Organizer
      第16回理論化学討論会
    • Place of Presentation
      福岡市健康づくりサポートセンター(福岡)
    • Related Report
      2013 Research-status Report
  • [Presentation] Development of multisite local orbitals in Conquest

    • Author(s)
      Ayako Nakata
    • Organizer
      Conquest Meeting 2013 & Beyond
    • Place of Presentation
      Universite Bordeaux 1 (ボルドー, フランス)
    • Related Report
      2013 Research-status Report
  • [Presentation] 第一原理O(N)計算プログラムCONQUESTにおける局在軌道の最適化と応用計算

    • Author(s)
      中田彩子, D. R. Bowler, 宮崎剛
    • Organizer
      日本物理学会第69会年次大会
    • Place of Presentation
      東海大学湘南キャンパス(平塚)
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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