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Alternative polyadenylation in lung cancer

Research Project

Project/Area Number 25830098
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Tumor diagnostics
Research InstitutionThe University of Tokyo

Principal Investigator

WATANABE Kousuke  東京大学, 医学部附属病院, 助教 (50644291)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords肺がん / マイクロRNA / 選択的ポリアデニル化 / 転写後制御 / バイオマーカー / 非小細胞肺癌
Outline of Final Research Achievements

Alternative polyadenylation (APA), which induces shortening of the 3'UTR, is emerging as an important phenomenon in gene regulation. We identified 10 genes showing significant 3'UTR shortening in lung cancer, using the package of the Bioconductor for probe-level analyses of expression microarrays. We established and evaluated the APA score by quantitative RT-PCR in clinical specimens of non-small cell lung cancer, amd found that high APA score was an independet prognostic factor. In addition, both lower expression of PABPN1 and higher expression of the proliferation markers were correlated with high APA scores and a poor prognosis. These results suggest that the loss of PABPN1, a suppressor of APA, might promote tumor aggressiveness by releasing the cancer cells from microRNA-mediated gene regulation.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (6 results)

All 2015 2014 2013

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (3 results)

  • [Journal Article] Oncogenic TPM3-ALK activation requires dimerization through the coiled-coil structure of TPM32015

    • Author(s)
      Amano Y, Ishikawa R, Sakatani T, Ichinose J, Sunohara M, Watanabe K, Kage H, Nakajima J, Nagase T, Ohishi N, Takai D
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 13 Issue: 3 Pages: 457-60

    • DOI

      10.1016/j.bbrc.2015.01.014

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Alternative polyadenylation is associated with lower expression of PABPN1 and poor prognosis in non-small cell lung cancer.2014

    • Author(s)
      Ichinose J, Watanabe K, Sano A, Nagase T, Nakajima J, Fukayama M, Yatomi Y, Ohishi N, Takai D.
    • Journal Title

      Cancer Sci

      Volume: 105 Issue: 9 Pages: 1135-1141

    • DOI

      10.1111/cas.12472

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Disruption of the expression and function of microRNAs in lung cancer as a result of epigenetic changes2013

    • Author(s)
      Watanabe Kousuke, and Daiya Takai
    • Journal Title

      Frontiers in genetics

      Volume: 4 Pages: 275-275

    • DOI

      10.3389/fgene.2013.00275

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 非小細胞肺癌におけるmRNA 3'非翻訳領域の短縮と腫瘍の悪性度の関係2014

    • Author(s)
      一瀬淳二、渡辺広祐、佐野厚、村川知弘、高井大哉、中島淳
    • Organizer
      第55回日本肺癌学会総会
    • Place of Presentation
      京都
    • Year and Date
      2014-11-14 – 2014-11-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] Loss of PABPN1 and alternative polyadenylation yield poor prognosis in non-small cell lung cancer2014

    • Author(s)
      Junji Ichinose, Kousuke Watanabe, Atsushi Sano, Takahide Nagase, Jun Nakajima, Masashi Fukayama, Yutaka Yatomi, Nobuya Ohishi, and Daiya Takai
    • Organizer
      AACR-IASLC Joint Conference on Molecular Origins of Lung Cancer
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] Histone methylation-mediated silencing of mir-139 enhances an aggressive phenotype of non-small cell lung cancer2014

    • Author(s)
      Kousuke Watanabe, Mitsuhiro Sunohara, Yosuke Amano, Rie Ishikawa, Junji Ichinose, Jun Nakajima, Masashi Fukayama, Yutaka Yatomi, Takahide Nagase, Nobuya Ohishi, and Daiya Takai
    • Organizer
      AACR-IASLC Joint Conference on Molecular Origins of Lung Cancer
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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