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Establishment of novel method for introduction of single-nucleotide substitution and application of the method to identification of mutation causing hereditary disease

Research Project

Project/Area Number 25830138
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Medical genome science
Research InstitutionHiroshima University

Principal Investigator

OCHIAI Hiorhi  広島大学, 理学(系)研究科(研究院), 特任講師 (60640753)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsTALEN / 一塩基多型 / 一塩基置換 / ゲノム編集 / 遺伝子ターゲティング / PCS / 遺伝性疾患 / 相同組換え / SNP / 人工ヌクレアーゼ / 遺伝病
Outline of Final Research Achievements

Premature chromatid separation (PCS) syndrome is a rare autosomal recessive disorder characterized by constitutional aneuploidy and a high risk of childhood cancer. One of the causes of the disease is functional insufficiency of BUBR1 protein. We found a unique single nucleotide substitution in an intergenic region 44 kb upstream of a BUB1B transcription start site, which cosegregated with the disorder. To examine whether this is the causal mutation, we designed a TALEN-mediated two-step single-base pair editing strategy and biallelically introduced this substitution into cultured human cells. The cell clones showed reduced BUB1B transcripts, and increased PCS frequency, which are the hallmarks of the syndrome. These results suggested that the nucleotide substitution identified was the causal mutation of PCS syndrome.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (14 results)

All 2015 2014 2013 Other

All Journal Article (6 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (5 results) (of which Invited: 2 results) Remarks (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] The microtubule depolymerizing activity of a mitotic kinesin protein KIF2A drives primary cilia disassembly coupled with cell proliferation2015

    • Author(s)
      Miyamoto T, Hosoba K, Ochiai H, Royba E, Izumi H, Sakuma T, Yamamoto T, Matsuura S
    • Journal Title

      Cell Reports

      Volume: 10 Issue: 5 Pages: 664-673

    • DOI

      10.1016/j.celrep.2015.01.003

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 新規一塩基置換導入法による高発がん性遺伝病の原因変異の同定2015

    • Author(s)
      落合 博, 松浦 伸也
    • Journal Title

      医学のあゆみ

      Volume: 252 Pages: 153-158

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells2014

    • Author(s)
      Ochiai, H., Sugawara, T., Sakuma, T., Yamamoto, T.
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 7125-7125

    • DOI

      10.1038/srep07125

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] TALEN-mediated single-base-pair editing identification of an intergenic mutation upstream of BUB1B as causative of PCS (MVA) syndrome.2014

    • Author(s)
      Ochiai H, Miyamoto T, Kanai A, Hosoba K, Sakuma T, Kudo Y, Asami K, Ogawa A, Watanabe A, Kajii T, Yamamoto T, Matsuura S.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 111(4) Issue: 4 Pages: 1461-6

    • DOI

      10.1073/pnas.1317008111

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] 哺乳類培養細胞におけるTALENを用いた遺伝子改変 ~マウスES細胞における遺伝子ターゲティングを例に2014

    • Author(s)
      落合 博
    • Journal Title

      実験医学別冊 最強のステップUPシリーズ 今すぐ始めるゲノム編集 TALEN&CRISPR/Cas9の必須知識と実験プロトコール

      Volume: 40 Pages: 62-72

    • Related Report
      2013 Research-status Report
  • [Journal Article] High efficiency TALENs enable FO functional analysis by targeted gene disruption in Xenopus laevis embryos.2013

    • Author(s)
      Suzuki KI, Isoyama Y, Kashiwagi K, Sakuma T, Ochiai H, Furuno N, Kashiwagi A and Yamamoto T.
    • Journal Title

      Biology Open

      Volume: (In press) Issue: 5 Pages: 448-452

    • DOI

      10.1242/bio.20133855

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Simultaneous live imaging of the transcription and nuclear position of specific genes2015

    • Author(s)
      Hiroshi Ochiai, Takeshi Sugawara, Takashi Yamamoto
    • Organizer
      2015 Cold Spring Harbor Symposium 21st Century Genetics: Genes at Work
    • Place of Presentation
      NY, USA
    • Year and Date
      2015-05-26 – 2015-06-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] Simultaneous live-imaging of gene position and its transcriptional activity in mouse embryonic stem cells2014

    • Author(s)
      Hiroshi Ochiai, Takeshi Sugawara, Takashi Yamamoto
    • Organizer
      4D Nucleome 2014
    • Place of Presentation
      広島市
    • Year and Date
      2014-12-17 – 2014-12-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Stochastic promoter activation affects gene expression variability in murine embryonic stem cell2014

    • Author(s)
      Hiroshi Ochiai, Takeshi Sugawara, Tetsushi Sakuma, Takashi Yamamoto
    • Organizer
      Cold Spring Harbor Laboratory meeting 2014 NUCLEAR ORGANIZATION & FUNCTION
    • Place of Presentation
      NY, USA
    • Year and Date
      2014-08-19 – 2014-08-23
    • Related Report
      2014 Annual Research Report
  • [Presentation] TALEN-mediated single-base-pair editing reveals the functional significance of an intergenic single nucleotide variant2014

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      International Symposium on RNAi and Genome Editing Research
    • Place of Presentation
      Tokushima, Japan
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] TALEN-mediated single-base-pair editing in PCS syndrome2014

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      3rd International Genome Engineering & Genome Editing-2014 Meeting on 'Synthetic Biology to Zinc Finger Nucleases & CRISPRs Regulation'
    • Place of Presentation
      Boston, USA
    • Related Report
      2013 Research-status Report
    • Invited
  • [Remarks] 研究者紹介:ResearchGate

    • URL

      https://www.researchgate.net/profile/Hiroshi_Ochiai3/

    • Related Report
      2013 Research-status Report
  • [Remarks] 研究者紹介:Google scholar

    • URL

      http://scholar.google.com/citations?user=PO2IK08AAAAJ&hl=en&oi=sra

    • Related Report
      2013 Research-status Report
  • [Patent(Industrial Property Rights)] DNA結合ドメインを含むポリペプチド2013

    • Inventor(s)
      7. 佐久間哲史、山本 卓、落合 博、松浦伸也、宮本達雄
    • Industrial Property Rights Holder
      7. 佐久間哲史、山本 卓、落合 博、松浦伸也、宮本達雄
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2013-166768
    • Filing Date
      2013-08-09
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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