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Information theoretical analysis of signaling network

Research Project

Project/Area Number 25830142
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionKyushu University (2014-2015)
The University of Tokyo (2013)

Principal Investigator

UDA SHINSUKE  九州大学, 生体防御医学研究所, 准教授 (20599609)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsシステム生物学 / シグナル伝達 / 情報理論 / 堅牢性 / 頑健性
Outline of Final Research Achievements

Robust transmission of information despite the presence of variation is a fundamental problem in cellular functions. However, the capability and characteristics of information transmission in signaling pathways remain poorly understood. We describe robustness and compensation of information transmission of signaling pathways at the cell population level. We calculated the mutual information transmitted through signaling pathways for the growth factor, which mediated gene expression. Growth factors appeared to carry only information sufficient for a binary decision. Information transmission was generally more robust than average signal intensity despite pharmacological perturbations, and compensation of information transmission occurred. Information transmission to the biological output of neurite extension appeared robust. Cells may use information entropy as information so that messages can be robustly transmitted despite variation in molecular activities among individual cells.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (9 results)

All 2016 2014 2013

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 1 results,  Invited: 5 results)

  • [Journal Article] Analysis of cellular signal transduction from an information theoretic approach2016

    • Author(s)
      Shinsuke Uda and Shinya Kuroda
    • Journal Title

      Seminars in Cell & Developmental Biology

      Volume: 51 Pages: 24-31

    • DOI

      10.1016/j.semcdb.2015.12.011

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Robustness and Compensation of Information of Signaling Pathways.2013

    • Author(s)
      Shinsuke Uda, Takeshi H Saito, Takamasa Kudo, Toshiya Kokaji, Takaho Tsuchiya, Hiroyuki Kubota, Yasunori Komori, Yu-ichi Ozaki, and Shinya Kuroda
    • Journal Title

      Science

      Volume: 341 Issue: 6145 Pages: 558-561

    • DOI

      10.1126/science.1234511

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] TBD2016

    • Author(s)
      Shinsuke Uda
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2016-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Information Theoretical Analysis of Signaling Pathway2016

    • Author(s)
      Shinsuke Uda
    • Organizer
      The 6th Annual World Congress of Molecular & Cell Biology
    • Place of Presentation
      Dalian, China
    • Year and Date
      2016-04-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞内情報伝達システムの情報理論的解析2016

    • Author(s)
      宇田新介
    • Organizer
      6.「生命動態の理解と制御のための基盤技術の創出」研究領域・第5回数理デザイン道場
    • Place of Presentation
      東京
    • Year and Date
      2016-02-19
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] データドリブンモデルから解明するPC12細胞の神経分化誘導における細胞内シグナル伝達のデコーディングメカニズム2014

    • Author(s)
      土屋貴穂,宇田新介,工藤隆将,唐沢康暉,黒田真也
    • Organizer
      第37回分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2014-11-26
    • Related Report
      2014 Research-status Report
  • [Presentation] データドリブンモデルから解明するPC12細胞の神経分化誘導における細胞内シグナル伝達のデコーディングメカニズム2014

    • Author(s)
      土屋貴穂,宇田新介,工藤隆将,黒田真也
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-17
    • Related Report
      2014 Research-status Report
  • [Presentation] Robustness and compensation of information transmission of signaling pathways despite perturbation2014

    • Author(s)
      Shinsuke Uda and Shinya Kuroda
    • Organizer
      The Joint Annual Meeting of the Japanese Society for Mathematical Biology and the Society for Mathematical Biology
    • Place of Presentation
      Osaka
    • Year and Date
      2014-07-30
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Robustness and compensation of information transmission of signaling pathways despite perturbation2013

    • Author(s)
      S. Uda, and S. Kuroda
    • Organizer
      Workshop: Gradients and Signalling: from chemotaxis to development
    • Place of Presentation
      沖縄科学技術大学院大学(沖縄県)
    • Related Report
      2013 Research-status Report
    • Invited

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Published: 2014-07-25   Modified: 2019-07-29  

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