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Mechanism to maintain pluripotency of the mouse epiblast via Nodal signaling.

Research Project

Project/Area Number 25840087
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionKyushu University

Principal Investigator

Oki Shinya  九州大学, 医学(系)研究科(研究院), 助教 (90452713)

Co-Investigator(Renkei-kenkyūsha) MENO Chikara  九州大学, 大学院医学研究院, 教授 (20311764)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
KeywordsNodal / エピブラスト / 中胚葉誘導 / 原条形成 / 多分化能 / ChIP-seq
Outline of Final Research Achievements

This study identified the genes directly regulated by Nodal signaling in the mouse epiblast, particularly involved in the pluripotency, differentiation into the neural epithelium, and primitive streak formation. This study also developed a software and database that are useful to exploit published ChIP-seq data.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (21 results)

All 2016 2015 2014 2013 Other

All Journal Article (7 results) (of which Peer Reviewed: 6 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (12 results) (of which Int'l Joint Research: 1 results) Remarks (2 results)

  • [Journal Article] Chd5 Regulates MuERV-L/MERVL Expression in Mouse Embryonic Stem Cells Via H3K27me3 Modification and Histone H3.1/H3.2.2015

    • Author(s)
      Hayashi M, Maehara K, Harada A, Semba Y, Kudo K, Takahashi H, Oki S, Meno C, Ichiyanagi K, Akashi K, Ohkawa Y.
    • Journal Title

      J Cell Biochem

      Volume: 117 Issue: 3 Pages: 780-792

    • DOI

      10.1002/jcb.25368

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hyperglycemia impairs left-right axis formation and thereby disturbs heart morphogenesis in mouse embryos.2015

    • Author(s)
      Hachisuga M, Oki S, Kitajima K, Ikuta S, Sumi T, Kato K, Wake N, Meno C.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112 Issue: 38 Pages: 5300-5307

    • DOI

      10.1073/pnas.1504529112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.2014

    • Author(s)
      Oki S, Maehara K, Ohkawa Y, Meno C
    • Journal Title

      Genes to Cells

      Volume: 19 Issue: 12 Pages: 919-926

    • DOI

      10.1111/gtc.12190

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Self-regulated left-right asymmetric expression of Pitx2c in the developing limb2014

    • Author(s)
      Shiratori, H., Yashiro, Iwai, N., Oki, S., Ikawa, Y., Kanata, K., and Hamada, H.
    • Journal Title

      Dev. Biol.

      Volume: 395 Issue: 2 Pages: 331-341

    • DOI

      10.1016/j.ydbio.2014.09.002

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール2014

    • Author(s)
      沖 真弥
    • Journal Title

      実験医学

      Volume: 19 Pages: 3101-06

    • Related Report
      2014 Research-status Report
  • [Journal Article] Wnt signaling regulates left-right axis formation in the node of mouse embryos2013

    • Author(s)
      Kitajima, Oki, Ohkawa, Sumi, Meno
    • Journal Title

      Dev Biol

      Volume: 380 Issue: 2 Pages: 222-32

    • DOI

      10.1016/j.ydbio.2013.05.011

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Epiblast ground state is controlled by canonical Wnt/ β-catenin signaling in the postimplantation mouse embryo and epiblast stem cells2013

    • Author(s)
      Sumi, Oki, Kitajima, Meno
    • Journal Title

      PLoS One

      Volume: 8 Issue: 5 Pages: e63378-e63378

    • DOI

      10.1371/journal.pone.0063378

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] ChIP-Atlas: Comprehensive and integrative database for visualizing and mining all published ChIP-seq data2016

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Ryo Nakaki, Osamu Ogasawara, Yoshihiro Okuda, Hideki Hatanaka, Chikara Meno
    • Organizer
      SYSTEMS BIOLOGY: GLOBAL REGULATION OF GENE EXPRESSION
    • Place of Presentation
      Cold spring harbor laboratory
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 仲木 竜, 目野 主税
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ChIP-seq データベースのためのメタ情報アノテーション2015

    • Author(s)
      沖 真弥
    • Organizer
      Annotathon 2015
    • Place of Presentation
      三島市
    • Year and Date
      2015-11-12
    • Related Report
      2015 Annual Research Report
  • [Presentation] 既報のChIP-seqデータをフル活用するための統合データベース2015

    • Author(s)
      沖 真弥
    • Organizer
      生命情報科学若手の会 第7回研究会
    • Place of Presentation
      鶴岡市
    • Year and Date
      2015-10-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ChIP-seq SRA を利活用するための統合データベース2015

    • Author(s)
      沖 真弥, 大田 達郎, 塩井 剛, 目野 主税
    • Organizer
      NGS現場の会第四回研究会
    • Place of Presentation
      つくば市
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ChIP-Atlas: Comprehensive database for visualizing all published ChIP-seq data2015

    • Author(s)
      Shinya Oki, Tazro Ohta, Go Shioi, Chikara Meno
    • Organizer
      48th Annual Meeting of JSDB
    • Place of Presentation
      つくば市
    • Year and Date
      2015-06-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] 誰でも使えるChIP-seqデータの可視化ツール2015

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第7回年会
    • Place of Presentation
      春日市 九州大学筑紫キャンパス
    • Year and Date
      2015-01-11 – 2015-01-12
    • Related Report
      2014 Research-status Report
  • [Presentation] SraTailor: 誰でも使えるChIP-seqデータの可視化ツール2014

    • Author(s)
      沖 真弥, 前原 一満, 大川 恭行, 目野 主税
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      横浜市 パシフィコ横浜
    • Year and Date
      2014-11-25
    • Related Report
      2014 Research-status Report
  • [Presentation] SraTailor: GUI software for visualizing high-throughput sequence read archives2014

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      47th Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      名古屋市 ウインクあいち
    • Year and Date
      2014-05-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Development of a Mac GUI Application to Visualize Published Raw ChIP-seq data2013

    • Author(s)
      Shinya Oki and Chikara Meno
    • Organizer
      The 61st NIBB Conference "Cellular Community in Mammalian Embryogenesis"
    • Place of Presentation
      岡崎コンファレンスセンター
    • Related Report
      2013 Research-status Report
  • [Presentation] 既報の次世代シーケンサ解析データを可視化するための簡易ソフトウェア2013

    • Author(s)
      沖 真弥
    • Organizer
      定量生物学の会 第六回年会
    • Place of Presentation
      大阪大学吹田キャンパス 銀杏会館
    • Related Report
      2013 Research-status Report
  • [Presentation] Development of a GUI software to visualize high through-put sequence read archives2013

    • Author(s)
      Shinya Oki, Kazumitsu Maehara, Yasuyuki Ohkawa, Chikara Meno
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Research-status Report
  • [Remarks] ChIP-Atlas

    • URL

      http://chip-atlas.org

    • Related Report
      2015 Annual Research Report
  • [Remarks] SraTailor

    • URL

      http://www.devbio.med.kyushu-u.ac.jp/sra_tailor/

    • Related Report
      2014 Research-status Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

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