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Studying diversity of cichlid fish community using environmental DNA analysis

Research Project

Project/Area Number 25840144
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionRyukoku University

Principal Investigator

MARUYAMA Atsushi  龍谷大学, 理工学部, 講師 (70368033)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords環境DNA / シクリッド魚類 / マラウイ湖 / ITS / D-loop / 定量PCR / シクリッド / マラウイ / 国際情報交換
Outline of Final Research Achievements

The environmental DNA technique was applied to cichlid fish community in Lake Malawi to establish a method for measuring divesity of the community. Sequence data of D-loop and ITS regions were collected from 103 sympatric fish species at the beggining of the study period. Using the sequence data, an eDNA primer targetting D-loop region of cichlids was designed, with which the efficient sampling methods specific to the focal lake was established. Water samples were collected from 12 sites of 6 district of the lake, which differ from each other in cichlid diversity. As interspecific variation in DNA sequence was found to be so poor, I am now trying to design another universal primers that amplify ITS region, with which cichlid diversity will be estimated.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (14 results)

All 2015 2014 2013

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results)

  • [Journal Article] Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction2015

    • Author(s)
      Toshifumi Minamoto, Takafumi Naka, Kazuhiko Moji, Atsushi Maruyama
    • Journal Title

      Limnology

      Volume: 印刷中

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Release Rate of Environmental DNA from Juvenile and Adult Fish.2015

    • Author(s)
      Maruyama, A., Nakamura, K., Yamanaka, H., Kondoh, and M., Minamoto, T.
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 12 Pages: e114639-e114639

    • DOI

      10.1371/journal.pone.0114639

    • NAID

      120006220782

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microhabitat variations in diatom composition and stable isotope ratios of the epilithic algae in Lake Malawi2015

    • Author(s)
      Maruyama A, Shinohara K, Sakurai M, Ohtsuka T, Rusuwa B
    • Journal Title

      Hydrobiologia

      Volume: 748 Issue: 1 Pages: 161-169

    • DOI

      10.1007/s10750-014-1977-3

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Studying the contribution of two types of landlocked Ayu fish in Lake Biwa to the next generation using nitrogen-stable isotope ratio analysis2015

    • Author(s)
      Ito T, Matsumura K, Kozawa G, Ozawa M, Mitsuo Y, Maruyama A, Yuma M
    • Journal Title

      Ichthyological Research

      Volume: 62 Issue: 3 Pages: 357-362

    • DOI

      10.1007/s10228-014-0439-2

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Weight-length relationships for twelve cichlid species from Lake Malawi, Africa2014

    • Author(s)
      Maruyama A, Zatha R, Rusuwa B
    • Journal Title

      International Journal of Fisheries and Aquatic Studies

      Volume: 2 Pages: 124-127

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 環境DNAを用いた魚類群集の種多様性と現存量推定:適応放散の現場で2014

    • Author(s)
      丸山 敦,Rusuwa, B.,源利文,山中裕樹,近藤倫生
    • Journal Title

      龍谷大学科技研ジャーナル

      Volume: 21 Pages: 24-27

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Quick change in δ15N values of fish mucus confirmed in the field using a migratory goby2014

    • Author(s)
      Maruyama, A., Shimonaka, H., and Ito, T.
    • Journal Title

      Ecology of Freshwater Fish

      Volume: 24 Issue: 1 Pages: 162-164

    • DOI

      10.1111/eff.12124

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] The relationship between an introduced predator?prey pair, largemouth2014

    • Author(s)
      Noda, H. and Maruyama, A.
    • Journal Title

      Ichthyological Research

      Volume: 61 Issue: 1 Pages: 159-164

    • DOI

      10.1111/pre.12036

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] The relationship between an introduced predator?prey pair, largemouth bass and bluegill, and the chlorophyll concentration in farm ponds2014

    • Author(s)
      Noda, H. and Maruyama, A.
    • Journal Title

      Ichthyological Research

      Volume: 61 Issue: 2 Pages: 159-164

    • DOI

      10.1007/s10228-013-0380-9

    • NAID

      40020049185

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Ligula intestinalis (Cestoda: Pseudophyllidea) infection of Engraulicypris sardella (Pisces: Cyprinidae) in Lake Malawi2014

    • Author(s)
      Rusuwa, B., Ngochera, M. and Maruyama, A.
    • Journal Title

      Malawi Journal of Science and Technology

      Volume: 10 Pages: 8-14

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Environmental DNA release velocity from different sized fish2014

    • Author(s)
      Maruyama A, Nakamura K, Yamanaka H, Kondoh M, Minamoto T.
    • Organizer
      日本生態学会
    • Place of Presentation
      広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] 水田に生物がいると水質とイネはどう変化するか ~ドジョウ、タニシ、オタマ ジャクシが果たす役割~2014

    • Author(s)
      小山奈々・辻咲恵・池田町農業公社・ネイチャースケープ・丸山敦・岩井紀子
    • Organizer
      日本生態学会
    • Place of Presentation
      広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] 生物がいると水田の群集組成はどう変化するか ~ドジョウ、タニ シ、オタマジャクシが果たす役割~2014

    • Author(s)
      辻咲恵・小山奈々・大塚泰介・池田町農業公社・ネイチャースケープ・岩井紀 子・丸山敦
    • Organizer
      日本生態学会
    • Place of Presentation
      広島市
    • Related Report
      2013 Research-status Report
  • [Presentation] Taxonomic revision of three diatoms found in Lake Malawi; Afrocymbella brunii (Fricke) comb. nov., Afrocymbella rossii (Kociolek & Stoermer) comb. nov., and Aulacoseira euareolata (O.Muller) comb. nov. et nom. nov.2013

    • Author(s)
      篠原耕平・丸山敦・Bosco Rusuwa・大塚泰介
    • Organizer
      日本珪藻学会
    • Place of Presentation
      那覇市
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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