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Regulation mechanism of cyanobacterial multi-copy chromosome.

Research Project

Project/Area Number 25850056
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionTokyo University of Agriculture

Principal Investigator

Watanabe Satoru  東京農業大学, 応用生物科学部, 准教授 (10508237)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2013: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsシアノバクテリア / 細胞周期 / DNA複製 / 細胞分裂 / リン酸代謝 / メタボローム / トランスクリプトーム / リン酸ストレス
Outline of Final Research Achievements

Unlike bacteria such as Escherichia coli, freshwater cyanobacteria are known to contain multiple chromosomal copies per cell, at all stages of their cell cycle. Our studies have revealed that DNA replication of multi-copy chromosome is not tightly coupled to cell division in the cyanobacterium Synechococcus elongatus PCC 7942 (hereafter S. 7942). Here, we report the growth phase-dependent regulation of chromosomal copy number: it was significantly higher during the lag phase than during the following phases. To address the factors involved in the copy number regulation, we analysed the transcriptome and metabolome at each growth phase. The results of these analyses suggest that the phosphate-starvation response occurred at the late-linear phase. Correspondingly, the phosphate ion was almost lost in the late-linear phase culture. Phosphate is a primary substrate for DNA synthesis, thus we concluded that the chromosome copy number depends on the phosphate amount in the culture.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (28 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (24 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results)

  • [Int'l Joint Research] フライブルク大学/テュービンゲン大学/ロストック大学(ドイツ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Diversification of DnaA dependency for DNA replication in cyanobacterial evolution.2016

    • Author(s)
      Ohbayashi R., Watanabe S., Ehira S., Kanesaki Y., Chibazakura T., and Yoshikawa H.
    • Journal Title

      ISME Journal

      Volume: 10 Issue: 5 Pages: 1113-1121

    • DOI

      10.1038/ismej.2015.194

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A tightly inducible riboswitch system in Synechocystis sp. PCC 6803.2016

    • Author(s)
      Ryudo Ohbayashi, Hideto Akai, Hirofumi Yoshikawa, Wolfgang R. Hess, and Satoru Watanabe
    • Journal Title

      Journal of General Applied Microbiology

      Volume: in press

    • NAID

      130005164755

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Intensive DNA replication and metabolism during the lag phase in cyanobacteria2015

    • Author(s)
      Watanabe S., Ohbayashi R., Kanesaki Y., Saito N., Chibazakura T., Soga T., and Yoshikawa H.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 9 Pages: e0136800-e0136800

    • DOI

      10.1371/journal.pone.0136800

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 複数コピーゲノムを持つシアノバクテリアの複製・増殖機構2016

    • Author(s)
      渡辺智
    • Organizer
      第89回日本細菌学会総会
    • Place of Presentation
      大阪国際交流センター
    • Year and Date
      2016-03-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synechococcus elongatus PCC 7942におけるゲノムコピー数制御機構の解析2016

    • Author(s)
      辻出亘寛、渡辺智、橋本千晴、大林龍胆、兼崎友、吉川博文
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synechococcus elongatus PCC 7942におけるマルチコピーゲノムの分布制御機構の解析2016

    • Author(s)
      内桶香那、渡辺智、野田明日翔、中武詩津花、森岡さゆみ、湯本真実、大林龍胆、兼崎友、千葉櫻拓、吉川博文
    • Organizer
      第10回日本ゲノム微生物学会年会
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Year and Date
      2016-03-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] シアノバクテリアにおけるRNaseの発現、機能制御2015

    • Author(s)
      渡辺智
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Synechocystis sp.PCC 6803における遺伝子発現制御系の改良2015

    • Author(s)
      沼倉萌、大林龍胆、赤井秀人、吉川博文、渡辺智
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synechococcus elongatus PCC 7942におけるDNA複製開始制御機構の解析2015

    • Author(s)
      中町愛、大林龍胆、渡辺智、千葉櫻拓、吉川博文
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synechococcus elongatus PCC 7942におけるゲノムコピー数制御機構の解析2015

    • Author(s)
      辻出亘寛、渡辺智、橋本千晴、大林龍胆、兼崎友、吉川博文
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 暗所における代謝活性の違いが生み出すDNA複製制御の多様性2015

    • Author(s)
      大林龍胆、山本純也、渡辺智、吉川博文
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] Synechococcus elongatus PCC 7942におけるマルチコピーゲノムの分布制御機構の解析2015

    • Author(s)
      内桶香那、渡辺智、野田明日翔、中武詩津花、森岡さゆみ、湯本真実、大林龍胆、兼崎友、千葉櫻拓、吉川博文
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 合成生物“シアノバチルス”を用いた大規模異種ゲノム発現の試み2015

    • Author(s)
      美田知也、細村匡太郎、渡辺智、兼崎友、板谷光泰、吉川博文
    • Organizer
      藍藻の分子生物学2015
    • Place of Presentation
      かずさアカデミアホール
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 複数コピーゲノムを持つシアノバクテリアの細胞増殖戦略2015

    • Author(s)
      渡辺智、大林龍担、山本純也、兼崎友、千葉櫻拓、吉川博文
    • Organizer
      日本微生物生態学会第30回年会
    • Place of Presentation
      土浦市役所 亀城プラザ
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] Cell division-uncoupled DNA replication and metabolism in cyanobacteria Synechococcus elongatus PCC 7942.2015

    • Author(s)
      Satoru Watanabe, Ryudo Ohbayashi, Yu kanesaki, Taku Chibazakura, Hirofumi Yoshikawa
    • Organizer
      15th International Symposium on Phototrophic Prokaryotes.
    • Place of Presentation
      Tuebingen University
    • Year and Date
      2015-08-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Variety of dependency on DnaA protein for DNA replication among cyanobacterial lineages.2015

    • Author(s)
      Ryudo Ohbayashi, Satoru Watanabe, Shigeki Ehira, Yu kanesaki, Taku Chibazakura, Hirofumi Yoshikawa.
    • Organizer
      15th International Symposium on Phototrophic Prokaryotes.
    • Place of Presentation
      Tuebingen University
    • Year and Date
      2015-08-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of the associated genes for sybstrain-apecific phenotypes of a cyanobacterium Synechococcus elongatus PCC 7942.2015

    • Author(s)
      Yu kanesaki, Ryudo Ohbayashi, Satoru Watanabe, Hirofumi Yoshikawa.
    • Organizer
      15th International Symposium on Phototrophic Prokaryotes.
    • Place of Presentation
      Tuebingen University
    • Year and Date
      2015-08-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA replication of cyanobacterial multi-copy chromosomes2015

    • Author(s)
      Satoru Watanabe
    • Organizer
      The German-Japanese Binational Seminar 2015
    • Place of Presentation
      Atami, Japan
    • Year and Date
      2015-03-21 – 2015-03-26
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] シアノバクテリアにおける増殖相に依存したゲノムコピー数制御機構2015

    • Author(s)
      渡辺智、大林龍胆、兼崎友、齋藤菜摘、千葉櫻拓、曽我朋義、吉川博文
    • Organizer
      第9回 ゲノム微生物学会年会
    • Place of Presentation
      神戸大学
    • Year and Date
      2015-03-06 – 2015-03-08
    • Related Report
      2014 Research-status Report
  • [Presentation] シアノバクテリアにおける増殖相に依存したゲノムコピー数制御機構2014

    • Author(s)
      渡辺智、大林龍胆、兼崎友、齋藤菜摘、千葉櫻拓、曽我朋義、吉川博文
    • Organizer
      第37回 日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] シアノバクテリアの細胞増殖2014

    • Author(s)
      渡辺 智
    • Organizer
      平成26年度 細菌細胞の増殖と代謝研究会 ~細菌細胞増殖の多様性~
    • Place of Presentation
      国立遺伝学研究所、三島
    • Year and Date
      2014-10-24 – 2014-10-25
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] シアノバクテリアにおける増殖相に依存したゲノムコピー数制御機構2014

    • Author(s)
      渡辺智、大林龍胆、兼崎友、齋藤菜摘、千葉櫻拓、曽我朋義、吉川博文
    • Organizer
      日本農芸化学会関東支部2014年度支部大会
    • Place of Presentation
      埼玉大学
    • Year and Date
      2014-10-18
    • Related Report
      2014 Research-status Report
  • [Presentation] Control of chromosome copy number depending on growth phase in cyanobacteria.2014

    • Author(s)
      Satoru Watanabe, Ryudo Ohbayashi, Yu Kanesaki, Natsumi Saito, Ryuuichi Hirota, Naoto Shigenobu, Taku Chibazakura, Tomoyoshi Soga, and Hirofumi Yoshikawa
    • Organizer
      9th European Workshop on the Molecular Biology of Cyanobacteria
    • Place of Presentation
      Texel, The Netherlands
    • Year and Date
      2014-09-07 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] Regulation mechanism of DNA replication in cyanobacteria.2014

    • Author(s)
      Ryudo Ohbayashi, Satoru Watanabe, Yu Kanesaki, Rei Narikawa, Taku Chibazakura, Masahiko Ikeuchi and Hirofumi Yoshikawa
    • Organizer
      9th European Workshop on the Molecular Biology of Cyanobacteria
    • Place of Presentation
      Texel, The Netherlands
    • Year and Date
      2014-09-07 – 2014-09-11
    • Related Report
      2014 Research-status Report
  • [Presentation] RNase E interacting proteins in the cyanobacterium Synechococcus elongatus PCC 79422013

    • Author(s)
      Satoru Watanabe, Wolfgang R. Hess, and Hirofumi Yoshikawa
    • Organizer
      3rd Conference on Regulationg with RNA in Bacteria
    • Place of Presentation
      Wuerzburg, Germany
    • Related Report
      2013 Research-status Report
  • [Presentation] Regulation mechanism of DNA replication in cyanobacteria2013

    • Author(s)
      Ryudo Ohbayashi, Satoru Watanabe, Yu Kanesaki, Jun-ya Yamomoto, Taku Chibazakura, and Hirofumi Yoshikawa
    • Organizer
      EMBL symposium, New Approaches and Concepts in Microbiology
    • Place of Presentation
      Heidelberg, Germany
    • Related Report
      2013 Research-status Report
  • [Presentation] Chromosome positioning in rod-shaped cyanobacteria2013

    • Author(s)
      Satoru Watanabe, Aska Noda, Shizuka Nakatake, Ryudo Ohbayashi, Yu Kanesaki, Taku Chibazakura, and Hirofumi Yoshikawa
    • Organizer
      EMBL symposium, New Approaches and Concepts in Microbiology
    • Place of Presentation
      Heidelberg, Germany
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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