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Molecular understanding of gliomagenesis using neural differentiation sysytem

Research Project

Project/Area Number 25860236
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Pathological medical chemistry
Research InstitutionKyoto University

Principal Investigator

WATANABE Akira  京都大学, iPS細胞研究所, 助教 (60506765)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsシングルセル / 脳腫瘍 / 神経分化 / 単一細胞解析 / 細胞分化
Outline of Final Research Achievements

The purpose of this study is to address the early event of gliomagenesis. I hypothesized that initiation of tumorigenesis is deviation from a normal neural differentiation. First, I established a methodology of single cell gene expression analysis, which enables to analyze dynamics of transcriptome during the differentiation. By combination with bioinformatical analysis, I successfully re-order the single cell samples in order to differentiation stage. Then, I applied this technique to neural differentiation, and demonstrated the dynamic alteration of transcription during neural differentiation. And also, I could identify cell populations that deviated from normal differentiation. The molecular mechanism that is responsible for branching may facilitate the molecular understanding of gliomagenesis.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (20 results)

All 2015 2014 2013

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 5 results,  Acknowledgement Compliant: 2 results) Presentation (9 results) (of which Invited: 7 results) Book (4 results)

  • [Journal Article] Precise Correction of the Dystrophin Gene in Duchenne Muscular Dystrophy Patient iPS Cells by TALEN and CRISPR-Cas92015

    • Author(s)
      Hongmei Lisa Li
    • Journal Title

      Stem Cell Reports

      Volume: 4 Issue: 1 Pages: 143-154

    • DOI

      10.1016/j.stemcr.2014.10.013

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evaluation of safety of induced pluripotent stem cells by genome integrity.2014

    • Author(s)
      Watanabe A, Amano N, Tokunaga Y, Unyanee P, Yamanaka S
    • Journal Title

      Inflammation and Regeneration

      Volume: 34 Pages: 87-93

    • NAID

      130004482323

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential.2014

    • Author(s)
      Ohnuki M, Tanabe K, Sutou K, Teramoto I, Sawamura Y, Narita M, Nakamura M, Tokunaga Y, Nakamura M, Watanabe A, Yamanaka S, Takahashi K.
    • Journal Title

      Proceeding of the National Academy of Science U.S.A

      Volume: 111 Issue: 34 Pages: 12426-12431

    • DOI

      10.1073/pnas.1413299111

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expandable Megakaryocyte Cell Lines Enable Clinically Applicable Generation of Platelets from Human Induced Pluripotent Stem Cells.2014

    • Author(s)
      Nakamura S, Takayama N, Hirata S, Seo H, Endo H, Ochi K, Fujita KI, Koike T, Harimoto KI, Dohda T, Watanabe A, Okita K, Takahashi N, Sawaguchi A, Yamanaka S, Nakauchi H, Nishimura S, Eto K.
    • Journal Title

      Cell Stem Cell.

      Volume: 14 Issue: 4 Pages: 535-48

    • DOI

      10.1016/j.stem.2014.01.011

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation and characterization of induced pluripotent stem cells from Aid-deficient mice.2014

    • Author(s)
      Shimamoto R, Amano N, Ichisaka T, Watanabe A, Yamanaka S, Okita K.
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 4 Pages: e94735-e94735

    • DOI

      10.1371/journal.pone.0094735

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of safety of induced pluripotent stem cells by genome integrity2014

    • Author(s)
      Watanabe A, Amano N, Tokunaga Y, Poolsap U, Yamanaka S
    • Journal Title

      Inflammation and Regeneration

      Volume: 34 Pages: 87-93

    • NAID

      130004482323

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier.2013

    • Author(s)
      Watanabe A, Yamada Y, Yamanaka S.
    • Journal Title

      Philos. Trans. R. Soc. B; Biol. Sci.

      Volume: 368 Issue: 1609 Pages: 20120292-20120292

    • DOI

      10.1098/rstb.2012.0292

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Single Cell Transcriptome Analysis Dissects Cell Fate Determination From iPS Cells to Cardiomyocyt2015

    • Author(s)
      Akira Watanabe
    • Organizer
      Molecular Clock 2015
    • Place of Presentation
      京都
    • Year and Date
      2015-03-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 次世代シークエンサーを用いたマルチオミックスとバイオインフォマティクスが支える再生医療2015

    • Author(s)
      渡辺 亮
    • Organizer
      第14回日本再生医療学会総会
    • Place of Presentation
      横浜
    • Year and Date
      2015-03-19 – 2015-03-21
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Single Cell Transcriptome Analysis Dissects Cell Fate Determination From iPS Cells to Cardiomyocyte2015

    • Author(s)
      Akira Watanabe
    • Organizer
      QBRI-Kyoto University Joint Symposium
    • Place of Presentation
      カタール
    • Year and Date
      2015-03-04 – 2015-03-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Single Cell Transcriptome Analysis Dissects Cell Fate Determination from iPS Cells to Cardiomyocyxte2015

    • Author(s)
      Akira Watanabe
    • Organizer
      International Symposium on Bio-imaging and Gene TargetingScience in Okayama
    • Place of Presentation
      岡山
    • Year and Date
      2015-02-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Deep Sequencing of iPS Cell for Regenerative Medicine.2013

    • Author(s)
      Akira Watanabe
    • Organizer
      Osong International Bio Symposium
    • Place of Presentation
      韓国
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Genome and Epeigenome Analysis of iPS Cells for Regenerative Medicine.2013

    • Author(s)
      Akira Watanabe
    • Organizer
      11th Annual Congress of Int‘l Drug Discovery Science & Technology, Therapy & EXPO
    • Place of Presentation
      中国
    • Related Report
      2013 Research-status Report
  • [Presentation] Single Cell Transcriptome Analysis of iPS Cells.2013

    • Author(s)
      Akira Watanabe
    • Organizer
      Single Cell Genomics Conference
    • Place of Presentation
      イスラエル
    • Related Report
      2013 Research-status Report
  • [Presentation] iPS細胞を用いた再生医療に向けたゲノム・エピゲノム解析2013

    • Author(s)
      Akira Watanabe
    • Organizer
      第34回日本炎症・再生医学会
    • Place of Presentation
      京都
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Single Cell Transcriptome Analysis of iPS Cells.2013

    • Author(s)
      Akira Watanabe
    • Organizer
      International Symposium on Single Molecule Analysis 2013
    • Place of Presentation
      京都
    • Related Report
      2013 Research-status Report
    • Invited
  • [Book] 実験医学2015年1月号「シングルセル解析が変える生命科学研究のパラダイムシフト」2015

    • Author(s)
      渡辺 亮
    • Total Pages
      151
    • Publisher
      羊土社
    • Related Report
      2014 Annual Research Report
  • [Book] 実験医学別冊 次世代シークエンス解析スタンダード「NGSのアプリケーションと今後の展望」2014

    • Author(s)
      渡辺 亮、野宮 唯、北岡 文美代、中村 正裕
    • Total Pages
      404
    • Publisher
      羊土社
    • Related Report
      2014 Annual Research Report
  • [Book] 実験医学別冊 次世代シークエンス解析スタンダード「NGSの試薬選択ガイド」2014

    • Author(s)
      渡辺 亮、田中 梓、北野 優子、桑原 順子
    • Total Pages
      404
    • Publisher
      羊土社
    • Related Report
      2014 Annual Research Report
  • [Book] 実験医学2015年1月号「幹細胞・発生研究におけるシングルセル遺伝子発現解析」2014

    • Author(s)
      中村 正裕、野村 真樹、溝曽路 祥孝、吉田 善紀、渡辺 亮
    • Total Pages
      151
    • Publisher
      羊土社
    • Related Report
      2014 Annual Research Report

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Published: 2014-07-25   Modified: 2019-07-29  

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