Identification of disease-causing genes for Coffin-Siris syndrome
Project/Area Number |
25860915
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Research Category |
Grant-in-Aid for Young Scientists (B)
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Allocation Type | Multi-year Fund |
Research Field |
Embryonic/Neonatal medicine
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Research Institution | Yokohama City University |
Principal Investigator |
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Project Period (FY) |
2013-04-01 – 2015-03-31
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Project Status |
Completed (Fiscal Year 2014)
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Budget Amount *help |
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
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Keywords | Coffin-Siris 症候群 / 疾患責任遺伝子 / 全エクソーム解析 / コフィン・サイリス症候群 / 先天異常学 |
Outline of Final Research Achievements |
Coffin-Siris syndrome is a congenital disorder characterized by intellectual disability, growth deficiency, microcephaly, coarse facial features, and hypoplastic or absent fifth fingernails and/or toenails. The majority of affected individuals represent sporadic cases. The genetic cause for this syndrome has not been elucidated. We reported that five genes are mutated in CSS, all of which encode subunits of the Brahma-associated factor (BAF) (also known in yeast as the SWI/SNF) ATP-dependent chromatin-remodeling complex: SMARCB1, SMARCA4, SMARCE1, ARID1A, and ARID1B. In addition, we perform whole-exome sequencing in additional CSS patients, identifying de novo SOX11 mutations in two patients with a mild CSS phenotype.
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Report
(3 results)
Research Products
(78 results)
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[Journal Article] Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa2014
Author(s)
Katagiri S, Akahori M, Sergeev Y, Yoshitake K, Ikeo K, Furuno M, Hayashi T, Kondo M, Ueno S, Tsunoda K, Shinoda K, Kuniyoshi K, Tsurusaki Y, Matsumoto N, Tsuneoka H, Iwata T.
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Journal Title
Plos One
Volume: 9(9)
Issue: 9
Pages: e108721-e108721
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] A girl with West syndrome and autistic features harboring a de novo TBL1XR1 mutation.2014
Author(s)
Saitsu H, Tohyama J, Walsh T, Kato M, Kobayashi Y, Lee M, Tsurusaki Y, Miyake N, Goto Y, Nishino I, Ohtake A, King MC, Matsumoto N.
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Journal Title
J Hum Genet
Volume: 59
Issue: 10
Pages: 581-3
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] Atypical giant axonal neuropathy arising from a homozygous mutation by uniparental isodisomy2014
Author(s)
Miyatake S, Koshimizu E, Tada H, Satoshi Moriya S, Takanashi J, Hirano Y, Hayashi M, Nakashima M, Tsurusaki Y, Miyake N, Matsumoto N, Saitsu H.
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Journal Title
Clin Genet
Volume: 87(4)
Issue: 4
Pages: 395-397
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Early onset epileptic encephalopathy caused by de novo SCN8A mutations2014
Author(s)
Ohba C, Kato M, Takahashi S, Lerman-Sagie T, Lev D, Terashima H, Kubota M, Kawawaki H, Matsufuji M, Kojima Y, Tateno A, Goldberg-Stern H, Straussberg R, Marom D, Leshinsky-Silver E, Nakashima M, Nishiyama K, Tsurusaki Y, Miyake N, Tanaka F, Matsumoto N, Saitsu H:
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Journal Title
Epilepsia
Volume: 55
Issue: 7
Pages: 994-1000
DOI
Related Report
Peer Reviewed
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[Journal Article] De novo SOX11 mutations cause Coffin-Siris syndrome2014
Author(s)
Tsurusaki Y, Ohashi H, Phadke S, Koshimizu E, Kou I, Shiina M, Suzuki T, Okamoto N, Imamura S, Yamashita M, Watanabe S, Yoshiura K-i, Kodera H, Miyatake S, Nakashima N, Saitsu H, Ogata K, Ikegawa S, Miyake N, and Matsumoto N.
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Journal Title
Nat Commun
Volume: 5
Issue: 1
Pages: 4011-4011
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Deep sequencing detects very low-grade somatic mosaicism in the unaffected mother of siblings with nemaline myopathy2014
Author(s)
Miyatake S, Koshimizu E, Hayashi YK, Miya K, Shiina M, Nakashima M, Tsurusaki Y, Miyake N, Saitsu H, Ogata K, Nishino I, Matsumoto N.
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Journal Title
Neuromuscul Disord
Volume: 24(7)
Issue: 7
Pages: 642-647
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] PIGA mutations cause early-onset epileptic encephalopathies and distinctive features2014
Author(s)
Kato M, Saitsu H, Murakami Y , Kikuchi K, Watanabe S, Iai M, Miya K, Matsuura R, Takayama R, Ohba C, Nakashima M, Tsurusaki Y, Miyake N, Hamano S, Osaka H, Hayasaka K, Kinoshita T, Matsumoto N.
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Journal Title
Neurology
Volume: 82(18)
Issue: 18
Pages: 1587-1596
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] De novo EEF1A2 mutations in patients with characteristic facial features, intellectual disability and, autistic behaviors and epilepsy2014
Author(s)
Nakajima J, Okamoto N, Tohyama J, Kato M, Arai H, Funahashi O, Tsurusakia Y, Nakashima M, Kawashima H, Saitsu H, Matsumoto N, Miyake N.
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Journal Title
Clin Genet
Volume: 87(4)
Issue: 4
Pages: 356-361
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] De novo WDR45 mutation in a patient showing clinically Rett syndrome with childhood iron deposition in brain2014
Author(s)
Ohba C, Nabatame S, Iijima Y, Nishiyama K, Tsurusaki Y, Nakashima M, Miyake N, Tanaka F, Ozono K, Saitsu H, Matsumoto N.
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Journal Title
J Hum Genet
Volume: 59(5)
Issue: 5
Pages: 292-295
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] A novel WTX mutation in a female patient with osteopathia striata with cranial sclerosis and hepatoblastoma.2014
Author(s)
Fujita A, Ochi N, Fujimaki H, Muramatsu H, Takahashi Y, Natsume J, Kojima S, Nakashima M, Tsurusaki Y, Saitsu H, Matsumoto N, Miyake N.
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Journal Title
Am J Med Genet A.
Volume: 164A
Issue: 4
Pages: 998-1002
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] A novel homozygous YARS2 mutation causessevere myopathy, lactic acidosis, and sideroblastic anemia 2.2014
Author(s)
Nakajima J, Eminoglu TF, Vatansever G, Nakashima M, Tsurusaki Y, Saitsu H,Kawashima H, Matsumoto N, Miyake N.
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Journal Title
J Hum Genet.
Volume: 59
Issue: 4
Pages: 229-32
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] PIGO mutations in intractable epilepsy and severe developmental delay with mild elevation of alkaline phosphatase levels.2014
Author(s)
Nakamura, K.Osaka, H.Murakami, Y.Anzai, R.Nishiyama, K.Kodera, H.Nakashima, M.Tsurusaki, Y.Miyake, N.Kinoshita, T.Matsumoto, N. and Saitsu, H
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Journal Title
Epilepsia
Volume: 55
Issue: 2
Pages: 13-17
DOI
Related Report
Peer Reviewed
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[Journal Article] Aortic aneurysm and craniosynostosis in a family with Cantu syndrome.2014
Author(s)
Hiraki Y, Miyatake S, Hayashidani M, Nishimura Y, Matsuura H, Kamada M, Kawagoe T, Yunoki K, Okamoto N, Yofune H, Nakashima M, Tsurusaki Y, Satisu H, Murakami A, Miyake N, Nishimura G, *Matsumoto N.
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Journal Title
Am J Med Genet Part A
Volume: 164
Issue: 1
Pages: 231-236
DOI
Related Report
Peer Reviewed
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[Journal Article] PIGN mutations cause congenital anomalies, developmental delay, hypotonia, epilepsy, and progressive cerebellar atrophy2014
Author(s)
Ohba C, Okamoto N, Murakami Y, Kawato K, Suzuki Y, Ikeda T, Tsurusaki Y, Nakashima M, Miyake N, Tanaka F, Kinoshita T, Matsumoto N, Saitsu H .
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Journal Title
Neurogenet
Volume: 15(2)
Issue: 2
Pages: 85-92
DOI
Related Report
Peer Reviewed / Acknowledgement Compliant
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[Journal Article] A de novo CASK mutation in pontocerebellar hypoplasia type 3 with early myoclonic epilepsy and tetralogy of Fallot.2014
Author(s)
Nakamura K, Jinnou H, Yokochi K, Okanishi T, Enoki H, Ohki S, Nishiyama K, Kodera H, Nakashima M, Tsurusaki Y, Miyake M, Matsumoto N, Saitsu H*.
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Journal Title
Brain Dev
Volume: 36
Issue: 3
Pages: 272-273
DOI
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Peer Reviewed
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[Journal Article] A hemizygous GYG2 mutation and Leigh syndrome: a possible link?2014
Author(s)
Imagawa E, Osaka H, Yamashita A, Shiina M, Takahashi E, Sugie H, Nakashima M, Tsurusaki Y, Saitsu H, Ogata K, Matsumoto N, Miyake N.
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Journal Title
Hum Genet.
Volume: 133(2
Issue: 2
Pages: 225-34
DOI
Related Report
Peer Reviewed / Open Access
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[Journal Article] De novo mutations in SLC35A2 encoding a UDP-galactose transporter cause early-onset epileptic encephalopathy2013
Author(s)
Kodera H, Nakamura K, Osaka H, Maegaki Y, Haginoya K, Mizumoto S, Kato M, Okamoto N, Iai M, Kondo Y, Nishiyama K, Tsurusaki Y, Nakashima M, Miyake N, Hayasaka K, Sugahara K, Yuasa I, Wada Y, Matsumoto N, Saitsu H.
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Journal Title
Hum Mutat
Volume: 34
Issue: 12
Pages: 1708-1714
DOI
Related Report
Peer Reviewed
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[Journal Article] Diagnostic utility of whole exome sequencing in cerebellar atrophy in childhood.2013
Author(s)
Ohba C, Osaka H, Iai M, Yamashita S, Suzuki S, Aida N, Doi H, Tomita-Katsumoto A, Nishiyama K, Tsurusaki Y, Nakashima M, Miyake N, Tanaka F, *Matsumoto N, *Saitsu H (*: co-correspondence).
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Journal Title
Neurogenet
Volume: 14
Issue: 3-4
Pages: 225-232
DOI
Related Report
Peer Reviewed
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[Journal Article] A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia syndrome.2013
Author(s)
Nakajima J, Eminoglu TF, Vatansever G, Nakashima M, Tsurusakia Y, Saitsu H, Kawashima H, *Matsumoto N, *Miyake N (*: co-correspondence).
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Journal Title
J Hum Genet
Volume: 58
Issue: 12
Pages: 822-824
DOI
Related Report
Peer Reviewed
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[Journal Article] Identification of a novel homozygous SPG7 mutation in a Japanese patient with spastic ataxia: making an efficient diagnosis using exome sequencing for autosomal recessive cerebellar ataxia and spastic paraplegia2013
Author(s)
Doi H, Ohba C, Tsurusaki Y, Miyatake S, Miyake N, Saitsu H, Kawamoto Y, Yoshida T, Koyano S, Suzuki Y, Kuroiwa Y, Tanaka F, Matsumoto N.
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Journal Title
Intern Med.
Volume: 52
Pages: 1629-33
NAID
Related Report
Peer Reviewed
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[Journal Article] Whole-exome sequencing identified a homozygous FNBP4 mutation in a family with a condition Microphthalmia with Limb Anomalies-like.2013
Author(s)
Kondo Y, Koshimizu E, Megarbane A, Hamanoue H, Okada I, Nishiyama K, Kodera H, Miyatake S, Tsurusaki Y, Nakashima M, Doi H, Miyake N, Saitsu H, *Matsumoto N.
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Journal Title
Am J Med Genet Part A
Volume: 161A
Issue: 7
Pages: 1543-1546
DOI
Related Report
Peer Reviewed
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[Journal Article] Target capture sequencing for detection of mutations and copy number changes causing early-onset epileptic encephalopathy.2013
Author(s)
Kodera H, Kato M, Nord AS, Walsh T, Lee M, Yamanaka G, Tohyama J, Nakamura K, Nakagawa E, Ikeda T, Ben-Zeev B, Lev D, Lerman-Sagie T, Straussberg R, Tanabe S, Ueda K, Amamoto M, Ohta S, Nododa Y, Nishiyama K, Tsurusaki Y, Nakashima M, Miyake N, Hayasaka K, King M-C, Matsumoto N, *Saitsu H.
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Journal Title
Epilepsia
Volume: 54
Issue: 7
Pages: 1262-1269
DOI
Related Report
Peer Reviewed
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[Journal Article] Exome sequencing identifies a novel INPPL1 mutation in opsismodysplasia2013
Author(s)
Iida A, Okamoto N, Miyake N, Nishimura G, Minami S, Sugimoto T, Nakashima M, Tsurusaki Y, Saitsu H, Shiina M, Ogata K, Watanabe S, Ohashi H, Matsumoto N, Ikegawa S
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Journal Title
J Hum Genet
Volume: 58
Issue: 6
Pages: 391-394
DOI
NAID
Related Report
Peer Reviewed
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[Journal Article] De novo mutations in the autophagy gene WDR45 cause static encephalopathy of childhood with neurodegeneration in adulthood2013
Author(s)
Saitsu H, Nishimura T, Muramatsu K, Kodera H, Kumada S, Sugai K, Kasai-Yoshida E, Sawaura N, Nishida H, Hoshino A, Ryujin F, Yoshioka S, Nishiyama K, Kondo Y, Tsurusaki Y, Nakashima M, Miyake N, Arakawa H, Kato M, Mizushima, Matsumoto N
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Journal Title
Nat Genet
Volume: 45
Issue: 4
Pages: 445-449
DOI
Related Report
Peer Reviewed
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[Journal Article] A novel SCARB2 mutation causing late-onset progressive myoclonus epilepsy2013
Author(s)
Higashiyama Y, Doi H, Wakabayashi M, Tsurusaki Y, Miyake N, Saitsu H, Ohba C, Fukai R, Miyatake S, Joki H, Koyano S, Suzuki Y, Tanaka F, Kuroiwa Y, Matsumoto N
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Journal Title
Mov Disord
Volume: 28
Issue: 4
Pages: 552-553
DOI
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Peer Reviewed
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[Presentation] Early Onset Epileptic Encephalopathy Caused by de novo SCN8A Mutations2014
Author(s)
H. Saitsu, C. Ohaba, M. Kato, S. Takahashi, T. Lerman-Sagie, D. Lev, H. Terashima, M. Kubota, H. Kawawaki, M. Matsufuji, Y. Kojima, A. Tateno, H. Goldberg-Stern, R. Straussberg, D. Marom, E. Leshinsky-Silver, M. Nakashima, K. Nishiyama, Y. Tsurusaki, N. Miyake, F. Tanaka, N. Matsumoto
Organizer
American Society of Human Genetics 2014 Meeting
Place of Presentation
San Diego (USA)
Year and Date
2014-10-18 – 2014-10-22
Related Report
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[Presentation] Expanding the phenotypic spectrum of TUBB4A-associated hypomyelinating leukoencephalopathies2014
Author(s)
S. Miyatake, H. Osaka, M. Shiina, M. Sasaki, J. Takanashi, K. Haginoya, T. Wada, M. Morimoto, N. Ando, Y. Ikuta, M. Nakashima, Y. Tsurusaki, N. Miyake, N. Matsumoto, H. Saitsu
Organizer
American Society of Human Genetics 2014 Meeting
Place of Presentation
San Diego (USA)
Year and Date
2014-10-18 – 2014-10-22
Related Report
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[Presentation] A hemizygous GYG2 mutation in Japanese siblings showing Leigh syndrome without marked elevation of lactate and pyruvate2014
Author(s)
E. Imagawa, H. Osaka, A. Yamashita, M. Shiina, E. Takahashi, H. Sugie, M. Nakashima, Y. Tsurusaki, H. Saitsu, K. Ogata, N. Matsumoto, N. Miyake
Organizer
American Society of Human Genetics 2014 Meeting
Place of Presentation
San Diego (USA)
Year and Date
2014-10-18 – 2014-10-22
Related Report
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[Presentation] Deep sequencing detects very low-grade somatic mosaicism in the unaffected mother of siblings with nemaline myopathy2014
Author(s)
E. Koshimizu, S. Miyatake, Y. K. Hayashi, K. Miya, M. Shiina, M. Nakashima, Y. Tsurusaki, N. Miyake, H. Saitsu, K. Ogata, I. Nishino, N. Matsumoto
Organizer
American Society of Human Genetics 2014 Meeting
Place of Presentation
San Diego (USA)
Year and Date
2014-10-18 – 2014-10-22
Related Report
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