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Development of a platform for histone-code research by setting nucleosomes with various modifications

Research Project

Project/Area Number 25870186
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

HAYASHI Gosuke  東京大学, 工学(系)研究科(研究院), 助教 (40648268)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2013: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsヒストン / エピジェネティクス / タンパク質化学合成 / Native Chemical Ligation / 翻訳後修飾 / ペプチド合成 / ペプチド連結反応
Outline of Final Research Achievements

We developed a chemical platform for approaching “histone code hypothesis”, that is one of the most important issues in epigenetics research. Total chemical synthesis of core histone H2A, H2B, and linker histone H1, all of which play essential roles in gene regulation and chromatin integrity, have been achieved by solid-phase peptide synthesis (SPPS) and native chemical ligation (NCL). The chemically-synthesized histones showed comparable ability to form nucleosome and chromatosome in vitro. Furthermore, we introduced dye-labelled H2A into HeLa cells and observed that the synthetic histone protein successfully localized into nucleus.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (17 results)

All 2015 2014 2013

All Journal Article (8 results) (of which Peer Reviewed: 6 results) Presentation (9 results) (of which Invited: 1 results)

  • [Journal Article] 2-oxazoline formation for selective chemical labeling of 5-hydroxylysine2015

    • Author(s)
      Hayashi G, Sakamoto R, Okamoto A
    • Journal Title

      Chemistry An Asian Journal

      Volume: 10 Issue: 5 Pages: 1138-1141

    • DOI

      10.1002/asia.201500172

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diazirine Photocrosslinking Recruits Activated FTO Demethylase Complexes for Specific N6-methyladenosine Recognition2015

    • Author(s)
      Jeong HS, Hayashi G, Okamoto A
    • Journal Title

      ACS Chemical Biology

      Volume: in press

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hybridization-sensitive fluorescent oligonucleotide probe conjugated with a bulky module for compartment-specific mRNA monitoring in a living cell2015

    • Author(s)
      Hayashi G, Yanase M, Takeda K, Sakakibara D, Sakamoto R, Wang DO, Okamoto A
    • Journal Title

      Bioconjugate Chemistry

      Volume: 26 Issue: 3 Pages: 412-417

    • DOI

      10.1021/acs.bioconjchem.5b00090

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An orthogonal ribosome-tRNAs pair via engineering of peptidyl transferase center2014

    • Author(s)
      Terasaka N*, Hayashi G*, Katoh T, Suga, H (*contributed equally)
    • Journal Title

      Nature Chemical Biology

      Volume: in press

    • NAID

      120006348461

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of photo switchable RNA aptamer-ligand complexes2014

    • Author(s)
      Hayashi G, Nakatani K
    • Journal Title

      Methods in Molecular Biology

      Volume: 1111 Pages: 29-40

    • DOI

      10.1007/978-1-62703-755-6_3

    • ISBN
      9781627037549, 9781627037556
    • Related Report
      2013 Research-status Report
  • [Journal Article] 生命現象を司るDNAのメチル化ーエピジェネティック因子を検出する化学2014

    • Author(s)
      林剛介、岡本晃充
    • Journal Title

      化学

      Volume: 69 Pages: 66-67

    • Related Report
      2013 Research-status Report
  • [Journal Article] Probe Design for Effective Fluorescent Imaging of Intracellular RNA2013

    • Author(s)
      Hayashi, G. ; Okamoto, A.
    • Journal Title

      Chem. Rec.

      Volume: 13-2 Issue: 2 Pages: 209-217

    • DOI

      10.1002/tcr.201200026

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] A nucleic acid probe labeled with desmethyl thiazole orange : A new type of hybridization-sensitive fluorescent oligonucleotide for live-cell RNA imaging2013

    • Author(s)
      Okamoto, A. ; Sugizaki, K. ; Yuki, M. ; Yanagisawa, H. ; Ikeda, S. ; Sueoka, T. ; Hayashi, G. ; Wang, D. O
    • Journal Title

      Org. Biomol. Chem.

      Volume: 11-2 Issue: 2 Pages: 362-371

    • DOI

      10.1039/c2ob26707a

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] 化学合成ヒストンを用いた細胞内エピジェネティック情報取得への試み2015

    • Author(s)
      林剛介
    • Organizer
      日本細胞生物学会大会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2015-06-30 – 2015-07-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] エピジェネティクス研究を指向したヒストンH2Bの化学合成2015

    • Author(s)
      榊原大輔、林剛介、岡本晃充
    • Organizer
      日本化学会 第95春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-25 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] エピジェネティクス研究に向けたリンカーヒストンH1の化学的合成2015

    • Author(s)
      坂元亮介、林剛介、岡本晃充
    • Organizer
      日本化学会 第95春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-25 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒストンH2Aの化学的合成と生細胞イメージング2015

    • Author(s)
      末岡拓馬、林剛介、岡本晃充
    • Organizer
      日本化学会 第95春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2015-03-25 – 2015-03-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] ヒストンH2Aの化学合成とエピジェネティクス研究への応用2014

    • Author(s)
      林剛介、末岡拓馬、岡本晃充
    • Organizer
      バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] Metal-mediated reactions to detect 5-methylcytosine and 5-hydroxymethylcytosine in DNA2014

    • Author(s)
      Gosuke Hayashi, Akimitsu Okamoto
    • Organizer
      XVIth Symposium on Chemistry of Nucleic Acid Components
    • Place of Presentation
      Cesky Krumlov, Czech Republic
    • Related Report
      2013 Research-status Report
  • [Presentation] FISH法を応用した単一細胞レベルでのメチル化検出法の開発と高感度化への試み2014

    • Author(s)
      林剛介、須藤周、豊村誠、杉崎香織、岡本晃充
    • Organizer
      第8回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京大学伊藤国際学術研究センター、東京都
    • Related Report
      2013 Research-status Report
  • [Presentation] 細胞内RNAを可視化するECHOプローブの開発と細胞内局在制御2013

    • Author(s)
      林剛介、池田修司、武田勝也、榊原大輔、王丹、岡本晃充
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      名古屋大学豊田講堂・野依学術交流間、愛知県
    • Related Report
      2013 Research-status Report
  • [Presentation] 配列選択的な化学的DNAメチルシトシン検出法の開発と検出感度向上への試み2013

    • Author(s)
      林剛介、豊村誠、杉崎香織、岡本晃充
    • Organizer
      第7回日本エピジェネティクス研究会年会
    • Place of Presentation
      新公会堂、奈良県
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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