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Elucidation of DNA repair mechanisms of blue light receptor proteins

Research Project

Project/Area Number 25870400
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Biophysics
Research InstitutionOsaka University

Principal Investigator

YAMAMOTO Junpei  大阪大学, 基礎工学研究科, 助教 (90571084)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2014: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2013: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsDNA修復 / DNA損傷 / 光生物 / 光反応 / 酵素反応機構 / 酵素
Outline of Final Research Achievements

(6-4) photolyases are flavoproteins that are able to directly repair the (6-4) photoproducts, one of the UV-induced DNA lesions, in response to blue light in sunlight. Thus far, overall function of the (6-4) photolyase still remains obscure. Here, in order to investigate the DNA repair mechanism of the (6-4) photolyase, molecular scientific studies using mutants of the enzyme were performed. As results, several amino acids residues involved in the repair and recognition of the (6-4) photoproduct have been identified. In future, these information would be applied to the investigations on cryptochromes, which share high homologies with the (6-4) photolyase and are responsible for the regulation of the circadian clocks in human.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (14 results)

All 2015 2014 2013

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (6 results) (of which Invited: 2 results)

  • [Journal Article] Analysis of structural flexibility of damaged DNA using thiol-tethered oligonucleotide duplexes2015

    • Author(s)
      Masashi Fujita, Shun Watanabe, Mariko Yoshizawa, Junpei Yamamoto, Shigenori Iwai
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 2 Pages: e0117798-e0117798

    • DOI

      10.1371/journal.pone.0117798

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] FTIR study of CPD photolyase with substrate in single strand DNA2015

    • Author(s)
      I M. M. Wijaya, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, E. D. Getzoff, H. Kandori*
    • Journal Title

      BIOPHYSICS

      Volume: 11 Issue: 0 Pages: 39-45

    • DOI

      10.2142/biophysics.11.39

    • NAID

      130004940808

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deformable nature of various damaged DNA duplexes estimated by an electrochemical analysis on electrodes2014

    • Author(s)
      J. Chiba, S. Aoki, J. Yamamoto, S. Iwai, and M. Inouye
    • Journal Title

      Chemical Communications

      Volume: 50 Issue: 76 Pages: 11126-11128

    • DOI

      10.1039/c4cc04513k

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] FAD Chromophore Charge Controls the Conformation of CPD-Photolyase α-Helices2014

    • Author(s)
      I M. M. Wijaya, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, E. D. Getzoff, J. T. M. Kennis, T. Mathes, H. Kandori*
    • Journal Title

      Biochemistry

      Volume: 53 Issue: 37 Pages: 5864-5875

    • DOI

      10.1021/bi500638b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A cyclobutane thymine-N4-methylcytosine dimer is resistant to hydrolysis but strongly blocls DNA synthesis.2014

    • Author(s)
      Yamamoto J, Oyama T, Kunishi T, Masutani C, Hanaoka F, Iwai S
    • Journal Title

      Nucleic Acids Res

      Volume: 42 Issue: 3 Pages: 2075-2084

    • DOI

      10.1093/nar/gkt1039

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] "Detection of distinct α-helical rearrangements of CPD photolyase upon substrate binding by FTIR spectroscopy"2013

    • Author(s)
      I M. M. Wijaya, Y. Zhang, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, E. D. Getzoff and H. Kandori
    • Journal Title

      Biochemistry

      Volume: 52 Issue: 6 Pages: 1019-1027

    • DOI

      10.1021/bi3016179

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Strand breakage of (6-4) photoproduct-containing DNA at neutral pH and its repair by the ERCC1-XPF protein complex2013

    • Author(s)
      Arichi N, Yamamoto J, Takahata C, Masuda Y, Kuraoka I, Iwai S
    • Journal Title

      Org. Biomol. Chem.

      Volume: 11 Issue: 21 Pages: 3526-3534

    • DOI

      10.1039/c3ob00012e

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Repair of the (6-4) photoproduct by DNA photolyase requires two photons2013

    • Author(s)
      Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, and Klaus Brettel
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 52 Issue: 29 Pages: 7432-7436

    • DOI

      10.1002/anie.201301567

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Synthesis of oligonucleotides containing chain-terminating antiviral drugs and their use in biochemical analysis2014

    • Author(s)
      Junpei Yamamoto and Shigenori Iwai
    • Organizer
      The 41th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      北九州国際会議場
    • Year and Date
      2014-11-05 – 2014-11-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular mechanism of the two photon DNA repair by the (6-4) photolyase2014

    • Author(s)
      山元淳平、清水幸平、藤原智子、藤堂剛、Pascal Plaza、Klaus Brettel、岩井成憲
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 抗ウイルス剤を末端に含むオリゴヌクレオチドの化学合成とそれを用いた生化学解析2014

    • Author(s)
      山元淳平、岩井成憲
    • Organizer
      第8回バイオ関連化学シンポジウム
    • Place of Presentation
      岡山大学津島キャンパス
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Annual Research Report
  • [Presentation] 紫外線損傷DNAの化学合成及びその修復反応・変異機構解析2014

    • Author(s)
      山元淳平
    • Organizer
      変異機構研究会 第27回夏の学校
    • Place of Presentation
      愛知県小牧勤労センター
    • Year and Date
      2014-06-21 – 2014-06-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A two photon DNA repair mechanism of the (6-4) photolyase2013

    • Author(s)
      Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, and Klaus Brettel
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Related Report
      2013 Research-status Report
  • [Presentation] Biochemical and thermodynamic properties of a cyclobutane thymine-N4-methylcytosine dimer2013

    • Author(s)
      Junpei Yamamoto, Tomoko Oyama, Tomohiro Kunishi, and Shigenori Iwai
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry 2013
    • Place of Presentation
      神奈川大学(神奈川県横浜市)
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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