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Mechanisms of epigenetic regulation via lncRNA transcription at the imprinted Zdbf2 locus

Research Project

Project/Area Number 25870766
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Integrative animal science
Genome biology
Research InstitutionTokyo University of Agriculture

Principal Investigator

KOBAYASHI Hisato  東京農業大学, 応用生物科学部, 准教授 (70632727)

Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2013: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsGenomic imprinting / DNA methylation / Epigenetics / lncRNA / Embryogenesis / Placenta / ゲノム刷り込み / DNAメチル化 / 発生・分化 / エピゲノム / 非コードRNA
Outline of Final Research Achievements

Parent-of-origin DNA methylation pattrens at imprinted genes are established during gametogenesis and maintained after fertilization. In this study, we focus on epigenetic regulation system of Zdbf2 imprinted gene. Here, we identified meternally methylated Gpr1 primary (germline-derived) DMR and Zdbf2 secontdary (somatic) DMR at the imprinted Zdbf2 region. We also demonstrated that the epigenetic regulation mechanisms via lncRNA, i. e., lncRNA or GPR1AS, were well-conserved between human and mouse genomes. Our findings provide a new model system for dynamic shaping DNA methylation patterns in mammalian genomic imprinting.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (9 results)

All 2014 2013

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 1 results)

  • [Journal Article] Effect of feeding behavior on circadian regulation of endothelin expression in mouse colon2014

    • Author(s)
      Kozakai T, Sakate M, Takizawa S, Uchide T, Kobayashi H, Oishi K, Ishida N, Saida K
    • Journal Title

      Life Sciences

      Volume: 118 Issue: 2 Pages: 232-237

    • DOI

      10.1016/j.lfs.2014.06.022

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of genomic 5-hydroxymethylcytosine during mouse oocyte growth2014

    • Author(s)
      Akihito Sakashita, Hisato Kobayashi, Takuya Wakai, Yuusuke Sotomaru, Kenichiro Hata, Tomohiro Kono
    • Journal Title

      Genes Cells

      Volume: 19 Issue: 8 Pages: 629-636

    • DOI

      10.1111/gtc.12164

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc.2013

    • Author(s)
      Kobayashi H, Yanagisawa E, Sakashita A, Sugawara N, Kumakura S, Ogawa H, Akutsu H, Hata K, Nakabayashi K, Kono T.
    • Journal Title

      Epigenetics

      Volume: 8 (6) Issue: 6 Pages: 635-645

    • DOI

      10.4161/epi.24887

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Mouse oocyte methylomes at base resolution reveal genome- wide accumulation of non-CpG methylation and role of DNA methyltransferases2013

    • Author(s)
      Shirane K, Toh H, Kobayashi H, Miura F, Chiba H, Ito T, Kono T, Sasaki H
    • Journal Title

      PLoS Genet

      Volume: 9(4) Issue: 4 Pages: 303-306

    • DOI

      10.1371/journal.pgen.1003439

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] マウス生殖細胞における全ゲノム包括的DNAメチローム解析2014

    • Author(s)
      小林久人、坂下陽彦、若井拓哉、小池佐、佐野賢、河野友宏
    • Organizer
      第37回日本分子生物学会大会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Methylomes and transcriptomes in mouse germ cells2014

    • Author(s)
      Hisato Kobayashi
    • Organizer
      International Symposium on “Epigenome Network, Development and Reprogramming of Germ Cells”
    • Place of Presentation
      イギリス、エジンバラ
    • Year and Date
      2014-09-01 – 2014-09-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] マウス生殖細胞の全ゲノム包括的DNAメチローム解析2013

    • Author(s)
      小林久人
    • Organizer
      第7回日本エピジェネティクス研究会年会
    • Place of Presentation
      奈良県新公会堂
    • Related Report
      2013 Research-status Report
  • [Presentation] マウス生殖細胞の全ゲノム包括的DNAメチローム解析2013

    • Author(s)
      小林久人
    • Organizer
      大阪大学蛋白質研究所セミナー DNAメチル化の制御機構-メチル化模様形成、維持と消去-
    • Place of Presentation
      大阪大学蛋白質研究所
    • Related Report
      2013 Research-status Report
  • [Presentation] 刷り込み遺伝子クラスター領域GPR1-ZDBF2におけるlncRNAを介したエピジェネティクス制御機構とヒト・マウスゲノム間の保存性2013

    • Author(s)
      小林久人、柳澤永吉、坂下陽彦、菅原直子、熊倉紫織、小川英彦、阿久津英憲、秦健一郎、中林一彦、河野友宏
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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