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Modeling pheromone source localization behavior by an insect

Research Project

Project/Area Number 25870915
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Soft computing
Intelligent informatics
Research InstitutionNational Institute of Informatics

Principal Investigator

Kobayashi Ryota  国立情報学研究所, 情報学プリンシプル研究系, 助教 (70549237)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords知能情報学 / 確率過程 / ソフトコンピューティング / シミュレーション / ベイズ統計学 / 探索アルゴリズム / 最適化 / ベイズ統計 / 機械学習
Outline of Final Research Achievements

Some insects, including ants, bees, and moths, can locate the source of pheromone based on the olfactory information. Especially, male silk moth can reach his mate (pheromone source) from sparse pheromone detections in spite of his weak eyesight. In this study we develop a search algorithm by mimicking the procedure that an insect searched a pheromone source. The pheromone detections of a searcher are described by using a Point process model and an algorithm for estimating the position of the source is derived by applying the framework of Bayesian statistics. We also evaluate the performance of search algorithms by simulating the agent that locates a fixed pheromone source. In addition, we have developed a method for predicting the future access to an online content by applying the framework of Point process.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (58 results)

All 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (3 results) Journal Article (11 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 11 results,  Open Access: 3 results,  Acknowledgement Compliant: 9 results) Presentation (39 results) (of which Int'l Joint Research: 5 results,  Invited: 11 results) Remarks (5 results)

  • [Int'l Joint Research] チェコ科学アカデミー 生理学研究所(チェコ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] チェコ科学アカデミー(チェコ)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] University of Namur(ベルギー)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Predicting the success of online petitions leveraging multidimensional time-series2017

    • Author(s)
      Proskurnia J, Grabowicz P, Kobayashi R, Castillo C, Cudre-Mauroux P, Aberer K
    • Journal Title

      Proceedings of the 26th International Conference on World Wide Web

      Volume: - Pages: 755-764

    • DOI

      10.1145/3038912.3052705

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Impact of slow K+ currents on spike generation can be described by an adaptive threshold model2016

    • Author(s)
      Kobayasi K and Kitano K
    • Journal Title

      Journal of Computational Neuroscience

      Volume: 40 Issue: 3 Pages: 347-362

    • DOI

      10.1007/s10827-016-0601-0

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Estimation of excitatory and inhibitory synaptic conductance variations in motoneurons during locomotor-like rhythmic activity2016

    • Author(s)
      Kobayashi R, Nishimaru H, Nishijo H
    • Journal Title

      Neuroscience

      Volume: 335 Pages: 72-81

    • DOI

      10.1016/j.neuroscience.2016.08.027

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Input-output relationship in social communications characterized by spike train analysis2016

    • Author(s)
      Aoki T, Takaguchi T, Kobayashi R, Lambiotte R
    • Journal Title

      Physical Review E

      Volume: 94 Issue: 4 Pages: 042313-042313

    • DOI

      10.1103/physreve.94.042313

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Fluctuation scaling in neural spike trains.2016

    • Author(s)
      Koyama S, Kobayashi R
    • Journal Title

      Mathematical Biosciences and Engineering

      Volume: 13 Issue: 3 Pages: 537-550

    • DOI

      10.3934/mbe.2016006

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A method for estimating of synaptic connectivity from spike data of multiple neurons2016

    • Author(s)
      Kobayashi R, Kitano K
    • Journal Title

      Nonlinear Theory and Its Applications, IEICE

      Volume: 7 Issue: 2 Pages: 156-163

    • DOI

      10.1587/nolta.7.156

    • NAID

      130005142577

    • ISSN
      2185-4106
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] TiDeH: Time-Dependent Hawkes Process for Predicting Retweet Dynamics.2016

    • Author(s)
      Kobayashi R, Lambiotte R
    • Journal Title

      The 10th International AAAI Conference on Web and Social Media (ICWSM 2016)

      Volume: -- Pages: 191-200

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Optimal decoding and information transmission in Hodgkin-Huxley neurons under metabolic cost constraints.2015

    • Author(s)
      Kostal L, Kobayashi R
    • Journal Title

      BioSystems

      Volume: 136 Pages: 3-10

    • DOI

      10.1016/j.biosystems.2015.06.008

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Estimation of the synaptic input firing rates and characterization of the stimulation effects in an auditory neuron2015

    • Author(s)
      Kobayashi R, He J, Lansky P.
    • Journal Title

      Frontiers in Computational Neuroscience

      Volume: 9 Pages: 59-59

    • DOI

      10.3389/fncom.2015.00059

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Impact of network topology on inference of synaptic connectivity from multi-neuronal spike data simulated by a large-scale cortical network model2013

    • Author(s)
      Ryota Kobayashi, Katsunori Kitano
    • Journal Title

      Journal of Computational Neuroscience

      Volume: 35 Issue: 1 Pages: 109-124

    • DOI

      10.1007/s10827-013-0443-y

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Population coding is essential for rapid information processing in the moth antennal lobe2013

    • Author(s)
      R Kobayashi, S. Namiki, R. Kanzaki, K. Kitano, I. Nishikawa, P. Lansky
    • Journal Title

      Brain Research

      Volume: 1536 Pages: 88-96

    • DOI

      10.1016/j.brainres.2013.05.007

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] エネルギー代謝を考慮に入れた神経細胞の最適な情報伝達2016

    • Author(s)
      Kobayashi R, Kostal L.
    • Organizer
      複雑コミュニケーションサイエンス研究会(CCS)
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2016-11-04
    • Related Report
      2016 Annual Research Report
  • [Presentation] Input-output relationshipin social communication datasets characterized by neuronal spike train analysis2016

    • Author(s)
      Aoki T, Takaguchi T, Kobayashi R, Lambiotte R
    • Organizer
      2016 Conference on Complex Systems
    • Place of Presentation
      Amsterdam, Netherlands
    • Year and Date
      2016-09-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Testing the statistical significance of synaptic connectivity2016

    • Author(s)
      Kobayashi R, Kurita S, Yamanaka Y, Kitano K, Shinomoto S
    • Organizer
      12th International Neural Coding Workshop, NC2016
    • Place of Presentation
      Koln, Germany
    • Year and Date
      2016-08-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Localization of the pattern generating circuits responsible for hopping gait in the α-chimaerin mouse spinal cord2016

    • Author(s)
      Nishimaru H, Inoue K, Kobayashi R, Vidiella S, Matsumoto J, Iwasato T, Nishijo H
    • Organizer
      39th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2016-07-20
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] TiDeH: Time-Dependent Hawkes process for predicting retweet dynamics2016

    • Author(s)
      Kobayashi R, Lambiotte R
    • Organizer
      10th International AAAI Conference on Web and Social Media (ICWSM2016)
    • Place of Presentation
      Koln, Germany
    • Year and Date
      2016-05-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 脳における計算の仕組み: ハードウェアとアルゴリズム2016

    • Author(s)
      小林 亮太
    • Organizer
      第2回 人工知能学会 汎用人工知能研究会
    • Place of Presentation
      国立情報学研究所 (東京都千代田区)
    • Year and Date
      2016-03-28
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] エネルギー代謝を考慮に入れた神経細胞の最適な情報伝達について2016

    • Author(s)
      Kostal L, Kobayashi R
    • Organizer
      日本物理学会第71回年次大会
    • Place of Presentation
      東北学院大学 (宮城県仙台市)
    • Year and Date
      2016-03-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Data driven approach for modeling neural systems2015

    • Author(s)
      Kobayashi R
    • Organizer
      Systmod Seminar
    • Place of Presentation
      University of Liege, Kingdom of Belgium
    • Year and Date
      2015-11-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Inferring synaptic connections from spike data of multiple neurons2015

    • Author(s)
      Kobayashi R
    • Organizer
      Seminar in Tabourier’s Lab.
    • Place of Presentation
      University Paris 6 Pierre and Marie Curie, France
    • Year and Date
      2015-11-06
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Data mining approach for modeling neuronal systems2015

    • Author(s)
      Kobayashi R
    • Organizer
      NAXYS SEMINAR
    • Place of Presentation
      University of Namur, Kingdom of Belgium
    • Year and Date
      2015-10-27
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Computer simulation of global brain dynamics at the neuronal resolution2015

    • Author(s)
      Kobayashi R, Shimono M
    • Organizer
      Neuroscience 2015
    • Place of Presentation
      Chicago, USA
    • Year and Date
      2015-10-17
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Estimation of excitatory and inhibitory input rate from a single voltage trace.2015

    • Author(s)
      Kobayashi R.
    • Organizer
      CNS 2015 meeting: Workshop "Stochastic Neural Dynamics
    • Place of Presentation
      Prague, Czech republic
    • Year and Date
      2015-07-22 – 2015-07-23
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] How slow K+ currents impact on spike generation mechanism?2015

    • Author(s)
      Kobayashi R, Kitano K.
    • Organizer
      CNS 2015 meeting
    • Place of Presentation
      Prague, Czech republic
    • Year and Date
      2015-07-18 – 2015-07-23
    • Related Report
      2014 Research-status Report
  • [Presentation] Dynamics on global brain networks at the neuronal resolution.2015

    • Author(s)
      Shimono M, Kobayashi R
    • Organizer
      CNS 2015 meeting
    • Place of Presentation
      Prague, Czech republic
    • Year and Date
      2015-07-18 – 2015-07-23
    • Related Report
      2014 Research-status Report
  • [Presentation] フェロモン源探索モデルのシミュレーションとその性能評価2015

    • Author(s)
      小林 亮太, Petr Lansky
    • Organizer
      2015年度 人工知能学会全国大会
    • Place of Presentation
      公立はこだて未来大学
    • Year and Date
      2015-05-30 – 2015-06-02
    • Related Report
      2014 Research-status Report
  • [Presentation] 脳神経シミュレーションによる人工知能技術開発の試み2015

    • Author(s)
      小林 亮太
    • Organizer
      ワークショップ「第1回 人工知能による科学・技術の革新」
    • Place of Presentation
      大阪イノベーションハブ
    • Year and Date
      2015-04-03
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] α-キメリンノックアウトマウスの歩行の際の脊髄運動ニューロンへのシナプス入力の測定と推定2015

    • Author(s)
      Nishimaru H, Kobayashi R, Itohara S, Iwasato T
    • Organizer
      第92回日本生理学会大会
    • Place of Presentation
      神戸国際会議場,展示場
    • Year and Date
      2015-03-21 – 2015-03-23
    • Related Report
      2014 Research-status Report
  • [Presentation] 神経細胞の発火特性が ISI スケーリング則に与える影響について2015

    • Author(s)
      小山慎介, 小林亮太
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2015-03-21
    • Related Report
      2014 Research-status Report
  • [Presentation] 遅いカリウム電流が神経細胞の信号処理に与える影響2015

    • Author(s)
      小林 亮太, 北野 勝則
    • Organizer
      日本物理学会第70回年次大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2015-03-21
    • Related Report
      2014 Research-status Report
  • [Presentation] Effect of slow K+ current on spike generation mechanism of a neuron2015

    • Author(s)
      Kobayashi R
    • Organizer
      Workshop on Rhythms and Waves in Neural Systems -From Mathematics to Neuroscience-
    • Place of Presentation
      東京大学 先端科学技術研究センター
    • Year and Date
      2015-03-20
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Estimating excitatory and inhibitory synaptic input from a single voltage trace2014

    • Author(s)
      Kobayashi R, He J, Lansky P.
    • Organizer
      Neuroscience 2014 (SFN 2014)
    • Place of Presentation
      Washington DC, USA
    • Year and Date
      2014-11-15 – 2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] Synaptic modulation of spinal motoneurons during locomotor-like rhythmic activity in the alpha-chimaerin knockout mouse in vitro2014

    • Author(s)
      Nishimaru H, Kobayashi R, Itohara S, Iwasato T.
    • Organizer
      Neuroscience 2014 (SFN 2014)
    • Place of Presentation
      Washington DC, USA
    • Year and Date
      2014-11-15 – 2014-11-19
    • Related Report
      2014 Research-status Report
  • [Presentation] A model reduction of Hodgkin-Huxley model with slow K+ currents2014

    • Author(s)
      Kobayashi R, Kitano K.
    • Organizer
      Neural Coding 2014
    • Place of Presentation
      INRA, France
    • Year and Date
      2014-10-06 – 2014-10-10
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Effects of slow K+ current on the spike threshold of a neuron2014

    • Author(s)
      Kobayashi R, Kitano K.
    • Organizer
      Neuroscience 2014 (第37回日本神経科学大会)
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-09-11 – 2014-09-13
    • Related Report
      2014 Research-status Report
  • [Presentation] Minimal time length of spike trains for the inference of connectivity2014

    • Author(s)
      Kurita S, Yamanaka Y, Kobayashi R, Kitano K, Shinomoto S.
    • Organizer
      Annual Conference of the Japanese Neural Network Society (JNNS 2014)
    • Place of Presentation
      Future University Hakodate, Japan
    • Year and Date
      2014-08-27 – 2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] A comparison of methods for estimating synaptic connectivity based on the simulated spike data2014

    • Author(s)
      Okino M, Kobayashi R, Kitano K.
    • Organizer
      Annual Conference of the Japanese Neural Network Society (JNNS 2014)
    • Place of Presentation
      Future University Hakodate, Japan
    • Year and Date
      2014-08-27 – 2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] Estimation of excitatory and inhibitory input rates from a single voltage trace2014

    • Author(s)
      Kobayashi R
    • Organizer
      Mathematical Modeling and Statistical Analysis in Neuroscience
    • Place of Presentation
      the University of Copenhagen, Denmark
    • Year and Date
      2014-07-02 – 2014-07-04
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 神経シナプス入力の推定: 神経細胞間の通信を傍受する2014

    • Author(s)
      小林 亮太
    • Organizer
      2014年度第10回電子情報通信学会複雑コミュニケーションサイエンス時限研究会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-05-19 – 2014-05-20
    • Related Report
      2014 Research-status Report
  • [Presentation] 多細胞スパイクデータからのシナプス結合推定2014

    • Author(s)
      沖野 将人,小林 亮太,北野 勝則
    • Organizer
      2014年度第10回電子情報通信学会複雑コミュニケーションサイエンス時限研究会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-05-19 – 2014-05-20
    • Related Report
      2014 Research-status Report
  • [Presentation] 遅いカリウム電流は神経細胞のスパイク閾値へ影響を与える2014

    • Author(s)
      小林 亮太, 北野 勝則
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学
    • Related Report
      2013 Research-status Report
  • [Presentation] 神経回路シミュレーションデータを用いた結合推定2014

    • Author(s)
      栗田修平, 小林亮太, 北野勝則, 篠本滋
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      東海大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Slow potassium currents underlie the spike threshold dynamics of multi-timescale adaptive threshold model2013

    • Author(s)
      Ryota Kobayashi, Katsunori Kitano
    • Organizer
      Neuroscience 2013
    • Place of Presentation
      San Diego, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] A simple model that can accurately predict spike timings generated by various kinds of neurons2013

    • Author(s)
      Ryota Kobayashi
    • Organizer
      Neural Coding: Information Beyond Shannon
    • Place of Presentation
      Prague, Czech Republic
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Inferring synaptic connections from multiple spike train data2013

    • Author(s)
      Ryota Kobayashi
    • Organizer
      Talk at Forschungszentrum Julich
    • Place of Presentation
      Forschungszentrum Julich
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] Conductance estimation of a conductance-based neuron model by the differential evolution algorithm2013

    • Author(s)
      Mao Suzuka, Kobayashi Ryota , Katsunori Kitano
    • Organizer
      CNS 2013
    • Place of Presentation
      Paris, France
    • Related Report
      2013 Research-status Report
  • [Presentation] Estimating synaptic connections from multiple spike trains based on a coupled escape rate model2013

    • Author(s)
      Ryota Kobayashi, Katsunori Kitano
    • Organizer
      CNS 2013
    • Place of Presentation
      Paris, France
    • Related Report
      2013 Research-status Report
  • [Presentation] Inference of synaptic connections from multiple spike train data based on a coupled escape rate model2013

    • Author(s)
      Ryota Kobayashi, Katsunori Kitano
    • Organizer
      Modeling Neural Activity: Statistics, Dynamical Systems, and Networks
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2013 Research-status Report
  • [Presentation] Decoding odor identity from neural activity in the moth antennal lobe.2013

    • Author(s)
      Ryota Kobayashi, Shigehiro Namiki, Ryohei Kanzaki, Katsunori Kitano, Ikuko Nishikawa, Petr Lansky
    • Organizer
      Neuro 2013
    • Place of Presentation
      国立京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] 多様な神経細胞のスパイク時系列を予測できる神経細胞モデル2013

    • Author(s)
      小林亮太
    • Organizer
      2013年度第1回電子情報通信学会複雑コミュニケーションサイエンス時限研究会
    • Place of Presentation
      立命館大学
    • Related Report
      2013 Research-status Report
  • [Remarks] 国立情報学研究所 小林 亮太

    • URL

      http://research.nii.ac.jp/~r-koba/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 国立情報学研究所 小林 亮太

    • URL

      http://www.nii.ac.jp/faculty/informatics/kobayashi_ryota/

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
  • [Remarks]

    • URL

      http://research.nii.ac.jp/~r-koba/publications.html

    • Related Report
      2015 Research-status Report
  • [Remarks] 国立情報学研究所 小林 亮太

    • URL

      http://research.nii.ac.jp/~r-koba/publications.html

    • Related Report
      2014 Research-status Report
  • [Remarks] 小林 亮太- 国立情報学研究所

    • URL

      http://www.nii.ac.jp/faculty/informatics/kobayashi_ryota/

    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2022-02-16  

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