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The novel molecular recognition mechanism of Ras by its structural polymorphism

Research Project

Project/Area Number 25871145
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Structural biochemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Nobuhisa Umeki  国立研究開発法人理化学研究所, 佐甲細胞情報研究室, 研究員 (70647502)

Project Period (FY) 2013-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2015: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2014: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2013: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsRas / RalGDS / 1分子計測 / 細胞内情報伝達 / 構造多型 / 一分子計測 / 低分子量Gタンパク質 / 低分子量G蛋白質
Outline of Final Research Achievements

To understand the mechanism of Ras-RalGDS-Ral signaling, translocation dynamics of RalGDS and its functional domains (RBD and REMCDC) to the plasma membranes of living cells were measured. Although the RBD played an important role in increasing the association rate constant between RalGDS and the plasma membrane, the REMCDC domain affected the dissociation rate constant from the membrane, which decreased after Ras activation. Thus, multiple regions and domains of both Ras and RalGDS work concertedly to regulate the Ras-RalGDS-Ral signaling. It is also suggested that the structural polymorphism of Ras is involved in interaction of Ras and RalGDS.

Report

(5 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (12 results)

All 2017 2016 2015 2014

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (7 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] Single-molecule fluorescence imaging of RalGDS on cell surfaces during signal transduction from Ras to Ral2017

    • Author(s)
      Yoshizawa R., Umeki N., Yanagawa M., Murata M., Sako Y.
    • Journal Title

      Biophysics and Physicobiology

      Volume: -

    • NAID

      130007040995

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mutually exclusive cooperative binding of myosin and cofilin to actin filaments involves cooperative conformational changes of actin.2016

    • Author(s)
      Ngo KX, Umeki N, Kijima ST, Kodera N, Ueno H, Furutani-Umezu N, Nakajima J, Noguchi TQP, Nagasaki A, Tokuraku K, Uyeda TQP
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 35449-35449

    • DOI

      10.1038/srep35449

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cofilin-induced cooperative conformational changes of actin subunits revealed using cofilin-actin fusion protein2016

    • Author(s)
      Umeki N., Hirose K., Uyeda TQ
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 20406-20406

    • DOI

      10.1038/srep20406

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Interaction of a Novel Fluorescent GTP Analogue with the small G-protein K-Ras2016

    • Author(s)
      Seigo IWATA, Kaori MASUHARA, Nobuhisa UMEKI, Yasushi SAKO and Shinsaku MARUTA
    • Journal Title

      The Journal of Biochemistry

      Volume: 159 Issue: 1 Pages: 41-48

    • DOI

      10.1093/jb/mvv071

    • NAID

      40020725621

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The significance of membrane fluidity of feeder cell-derived substrates for maintenance of iPS cell stemness.2015

    • Author(s)
      Zhou Y, Mao H, Joddar B, Umeki N, Sako Y, Wada K, Nishioka C, Takahashi E, Wang Y, Ito Y.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 11386-11386

    • DOI

      10.1038/srep11386

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Elucidation of the EGF dependent localization mechanism of RalGDS molecule to plasma membrane using TIRF microscopy2016

    • Author(s)
      Yoshizawa R., Umeki N., Yanagawa M., Murata M., Sako Y.
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Photocontrol of small G-protein H-Ras multimer formation using caged compounds2016

    • Author(s)
      Iwata S., Hashimoto T., Umeki N., Sugimoto Y., Kondo K., Maruta S.
    • Organizer
      American biophysical society 60th annual meeting
    • Place of Presentation
      Los Angeles, USA
    • Year and Date
      2016-02-27
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Ras-RalGDS相互作用の1分子蛍光イメージング2015

    • Author(s)
      梅木伸久、吉澤亮、中村由樹、稲葉岳彦、前田亮、柳川正隆、佐甲靖志
    • Organizer
      第88回日本生化学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] ケイジド化合物導入による低分子量Gタンパク質H-Rasの多量体形成の光制御2015

    • Author(s)
      岩田聖悟、橋本貴志、梅木伸久、近藤和典、丸田晋策
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Photo-regulation of the interaction between ras and ralgds using GTP analogues composed of photochromic molecules2015

    • Author(s)
      Masuhara K, Iwata S, Umeki N, Maruta S
    • Organizer
      American bio-physics 59th annual meeting
    • Place of Presentation
      Baltimore USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Research-status Report
  • [Presentation] Photo-regulation of small G protein normal and oncogenic K-ras using Photochromic molecules.2015

    • Author(s)
      Iwata S, Masuhara K, Umeki N, Kondo K, Maruta S
    • Organizer
      American bio-physics 59th annual meeting
    • Place of Presentation
      Baltimore USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Research-status Report
  • [Presentation] photo-regulation of small G-pritein K-ras using photochromic molecules2014

    • Author(s)
      Iwata S, Masuhara K, Umeki N, Kondo K, Maruta S
    • Organizer
      日本生物物理学会第52回年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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