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Analysis of SNPs in artificially degraded DNA

Research Project

Project/Area Number 25893256
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Legal medicine
Research InstitutionTokyo Women's Medical University

Principal Investigator

MITSUYO Machida  東京女子医科大学, 医学部, 特任助教 (60468692)

Project Period (FY) 2013-08-30 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2014: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2013: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsSNP解析 / 劣化DNA / DNA損傷 / 個人識別
Outline of Final Research Achievements

DNA in biological fluids at the scene is often degraded by many environmental factors. Short tandem repeats profiling, the most commonly used method for forensic DNA identification, is sometimes difficult to analyze degraded DNA samples. Here we focused on single nucleotide polymorphisms (SNPs) because the amplicon sizes are as short as those of degraded DNA in SNP analysis. To identify the SNPs that are resistant to degradation, we screened the SNPs from reported SNP lists and isolated the SNPs by amplified fragment length polymorphism analysis. Therefore six SNPs (rs891700, rs2111980, rs1360288, rs2116020, rs1636218, rs12293045) were demonstrated as detectable SNPs for degraded DNA samples.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • Research Products

    (4 results)

All 2014

All Presentation (4 results)

  • [Presentation] 紫外線を照射した劣化DNAのSNPs解析2014

    • Author(s)
      町田光世、木林和彦
    • Organizer
      日本DNA多型学会第23回学術集会
    • Place of Presentation
      愛知産業労働センターウィンクあいち(愛知県名古屋市)
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 変性DNAのSNPs解析2014

    • Author(s)
      町田光世、木林和彦
    • Organizer
      第83回日本法医学会学術関東地方集会
    • Place of Presentation
      東京女子医科大学弥生記念講堂(東京都新宿区)
    • Year and Date
      2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] Autosomal SNP genotyping of artificially degraded DNA by using UV irradiation2014

    • Author(s)
      Mitsuyo Machida, Kazuhiko Kibayashi
    • Organizer
      World Forensic Festival 2014
    • Place of Presentation
      Coex, Seoul, Korea
    • Year and Date
      2014-10-12 – 2014-10-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analyses of SNPs in artificially degraded DNA2014

    • Author(s)
      Mitsuyo Machida, Kazuhiko Kibayashi
    • Organizer
      9th International Symposium on Advances in Legal Medicine (ISALM2014)
    • Place of Presentation
      福岡国際会議場(福岡県福岡市)
    • Year and Date
      2014-06-16 – 2014-06-20
    • Related Report
      2014 Annual Research Report

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Published: 2013-09-12   Modified: 2019-07-29  

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