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Generation of minimal peptide catalysts based on the macrocyclic scaffold

Research Project

Project/Area Number 26220204
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biomolecular chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Suga Hiroaki  東京大学, 大学院理学系研究科(理学部), 教授 (00361668)

Research Collaborator NAGANO Masanobu  
Kato Bashiruddin, Nasir  
Yokosuka Ryota  
Komatsu Yamato  
Hideshima Tomoki  
Hashimoto Atsushi  
Yu Hao  
Takatsuji Ryo  
Ishida Satoshi  
Seino Jongkees  
Umemoto Shiori  
Project Period (FY) 2014-05-30 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥182,000,000 (Direct Cost: ¥140,000,000、Indirect Cost: ¥42,000,000)
Fiscal Year 2018: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Fiscal Year 2017: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Fiscal Year 2016: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Fiscal Year 2015: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Fiscal Year 2014: ¥36,400,000 (Direct Cost: ¥28,000,000、Indirect Cost: ¥8,400,000)
Keywordsペプチド / 天然物 / 翻訳 / リボザイム / ケミカルバイオロジー / 酵素
Outline of Final Research Achievements

Protein enzymes catalyze many pivotal chemical reactions in the body. Despite the great advances of the filed of life science so far, however, how the evolution of enzymes was proceeded is still unknown. We hypothesized that the short peptides would have been main biocatalysts in the evolutional process to the “protein world”. The purpose of this research is to generate minimal peptide catalysts based on the macrocyclic scaffold. To address this, we generated the trillions of constrained macrocyclic peptides and selected out the peptides in which have the acyltransferase activity by means of a combination of the FIT system and the mRNA display technique. After the selection rounds, we discovered the acyltransferase active macrocyclic peptides and the further thorough investigation revealed that the linear short peptide has a self-acylation activity. We believe that this finding accelerates the development of a research for the “peptide world” before the “protein world”.

Academic Significance and Societal Importance of the Research Achievements

タンパク質酵素は、生体内の大半の触媒反応を担う生体分子である。しかしながら、現在までの生命科学分野の発展をもってしても、どのように複雑な酵素が進化してきたか、その過程は未だ多くの謎に包まれている。それに対し、本研究の結果、分子量300ほどの極小のペプチドが生体内に存在するアシル化活性を有することを発見できた。本知見は、「酵素の起源」に一石を投じるものであるといえる。またエステル結合を官能基選択的に創り出すアシル化反応は生化学分野のみならず、有機化学分野を含めた幅広い分野で非常に稀であるため学術的価値が高い。

Assessment Rating
Verification Result (Rating)

A-

Assessment Rating
Result (Rating)

A-: Progress in the research is steadily towards the initial goal. However, further efforts are necessary as a part of the research progress is delayed.

Report

(10 results)
  • 2019 Research Progress Assessment (Verification Result) ( PDF )
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Abstract ( PDF )   Annual Research Report
  • Research Products

    (103 results)

All 2019 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (49 results) (of which Int'l Joint Research: 35 results,  Peer Reviewed: 49 results,  Open Access: 47 results,  Acknowledgement Compliant: 5 results) Presentation (50 results) (of which Int'l Joint Research: 36 results,  Invited: 50 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] Max Planck Institute(Germany)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Flexizyme-catalyzed synthesis of 3'-aminoacyl-NH-tRNAs.2019

    • Author(s)
      Katoh T, Suga H.
    • Journal Title

      Nucleic Acids Res.

      Volume: pii Issue: 9 Pages: e54-e54

    • DOI

      10.1093/nar/gkz143

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Macrocyclic Peptides as Drug Candidates: Recent Progress and Remaining Challenges.2019

    • Author(s)
      Vinogradov AA, Yin Y, Suga H.
    • Journal Title

      J Am Chem Soc.

      Volume: 141 Issue: 10 Pages: 4167-4181

    • DOI

      10.1021/jacs.8b13178

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chemical and Ribosomal Synthesis of Topologically Controlled Bicyclic and Tricyclic Peptide Scaffolds Primed by Selenoether Formation.2019

    • Author(s)
      Yin Y, Fei Q, Liu W, Li Z, Suga H, Wu C.
    • Journal Title

      Angew Chem Int Ed Engl.

      Volume: 58 Issue: 15 Pages: 4880-4885

    • DOI

      10.1002/anie.201813827

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ribosomal Synthesis of Backbone-Cyclic Peptides Compatible with In Vitro Display.2019

    • Author(s)
      Takatsuji R, Shinbara K, Katoh T, Goto Y, Passioura T, Yajima R, Komatsu Y, Suga H.
    • Journal Title

      J Am Chem Soc.

      Volume: 141 Issue: 6 Pages: 2279-2287

    • DOI

      10.1021/jacs.8b05327

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] De Novo Discovery of Nonstandard Macrocyclic Peptides as Noncompetitive Inhibitors of the Zika Virus NS2B-NS3 Protease.2019

    • Author(s)
      Nitsche C, Passioura T, Varava P, Mahawaththa MC, Leuthold MM, Klein CD, Suga H, Otting G.
    • Journal Title

      ACS Med Chem Lett.

      Volume: 10 Issue: 2 Pages: 168-174

    • DOI

      10.1021/acsmedchemlett.8b00535

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.2019

    • Author(s)
      Fleming SR, Bartges TE, Vinogradov AA, Kirkpatrick CL, Goto Y, Suga H, Hicks LM, Bowers AA.
    • Journal Title

      J Am Chem Soc.

      Volume: 141 Issue: 2 Pages: 758-762

    • DOI

      10.1021/jacs.8b11521

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural Features and Binding Modes of Thioether-Cyclized Peptide Ligands.2018

    • Author(s)
      Otero-Ramirez ME, Passioura T, Suga H.
    • Journal Title

      Biomedicines.

      Volume: 6 Issue: 4 Pages: 116-116

    • DOI

      10.3390/biomedicines6040116

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] In vitro expression of genetically encoded non-standard peptides consisting of exotic amino acid building blocks.2018

    • Author(s)
      Hirose H, Tsiamantas C, Katoh T, Suga H.
    • Journal Title

      Curr Opin Biotechnol. 2018 Nov 16;58:

      Volume: 58 Pages: 28-36

    • DOI

      10.1016/j.copbio.2018.10.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cellular signaling and gene expression profiles evoked by a bivalent macrocyclic peptide that serves as an artificial MET receptor agonist2018

    • Author(s)
      Miao Wenyu、Sakai Katsuya、Ozawa Naoya、Nishiuchi Takumi、Suzuki Yoshinori、Ito Kenichiro、Morioka Tomomi、Umitsu Masataka、Takagi Junichi、Suga Hiroaki、Matsumoto Kunio
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 16492-16492

    • DOI

      10.1038/s41598-018-34835-4

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RNA Display Methods for the Discovery of Bioactive Macrocycles.2018

    • Author(s)
      Huang Y, Wiedmann MM, Suga H.
    • Journal Title

      Chem Rev.

      Volume: XX Issue: 17 Pages: 10360-10391

    • DOI

      10.1021/acs.chemrev.8b00430

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Pyrrole-Mediated Peptide Cyclization Identified through Genetically Reprogrammed Peptide Synthesis.2018

    • Author(s)
      Decoene KW, Vannecke W, Passioura T, Suga H, Madder A.
    • Journal Title

      Biomedicines.

      Volume: 6 Issue: 4 Pages: 99-99

    • DOI

      10.3390/biomedicines6040099

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] MET Activation by a Macrocyclic Peptide Agonist that Couples to Biological Responses Differently from HGF in a Context-Dependent Manner.2018

    • Author(s)
      Miao W, Sakai K, Imamura R, Ito K, Suga H, Sakuma T, Yamamoto T, Matsumoto K.
    • Journal Title

      Int J Mol Sci.

      Volume: 19 Issue: 10 Pages: 3141-3141

    • DOI

      10.3390/ijms19103141

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nonproteinogenic deep mutational scanning of linear and cyclic peptides.2018

    • Author(s)
      Rogers JM, Passioura T, Suga H.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 115 Issue: 43 Pages: 10959-10964

    • DOI

      10.1073/pnas.1809901115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Artificial <i>In Vitro</i> Biosynthesis Systems for the Development of Pseudo-Natural Products2018

    • Author(s)
      Goto Yuki、Suga Hiroaki
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 91 Issue: 3 Pages: 410-419

    • DOI

      10.1246/bcsj.20170379

    • NAID

      130006507065

    • ISSN
      0009-2673, 1348-0634
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Artificial Division of Codon Boxes for Expansion of the Amino Acid Repertoire of Ribosomal Polypeptide Synthesis.2018

    • Author(s)
      Iwane Y, Katoh T, Goto Y, Suga H.
    • Journal Title

      Methods Mol Biol.

      Volume: 1728 Pages: 17-47

    • DOI

      10.1007/978-1-4939-7574-7_2

    • ISBN
      9781493975730, 9781493975747
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystallographic Analysis of MATE-Type Multidrug Exporter with Its Inhibitors.2018

    • Author(s)
      Kusakizako T, Tanaka Y, Hipolito CJ, Suga H, Nureki O.
    • Journal Title

      Methods Mol Biol.

      Volume: 1700 Pages: 37-57

    • DOI

      10.1007/978-1-4939-7454-2_3

    • ISBN
      9781493974528, 9781493974542
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] De Novo Macrocyclic Peptide Inhibitors of Hepatitis B Virus Cellular Entry.2018

    • Author(s)
      Passioura T, Watashi K, Fukano K, Shimura S, Saso W, Morishita R, Ogasawara Y, Tanaka Y, Mizokami M, Sureau C, Suga H, Wakita T.
    • Journal Title

      Cell Chem Biol.

      Volume: 25 Issue: 7 Pages: 906-915

    • DOI

      10.1016/j.chembiol.2018.04.011

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Display Selection of Exotic Macrocyclic Peptides Expressed under a Radically Reprogrammed 23 Amino Acid Genetic Code.2018

    • Author(s)
      Passioura T, Liu W, Dunkelmann D, Higuchi T, Suga H.
    • Journal Title

      J Am Chem Soc.

      Volume: 140 Issue: 37 Pages: 11551-11555

    • DOI

      10.1021/jacs.8b03367

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Engineering of RiPP pathways for the production of artificial peptides bearing various non-proteinogenic structures2018

    • Author(s)
      Goto Yuki、Suga Hiroaki
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 46 Pages: 82-90

    • DOI

      10.1016/j.cbpa.2018.06.014

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Facile Synthesis of Dimeric Thioether-Macrocyclic Peptides with Antibody-like Affinity against Plexin-B12018

    • Author(s)
      Bashiruddin Nasir K.、Matsunaga Yukiko、Nagano Masanobu、Takagi Junichi、Suga Hiroaki
    • Journal Title

      Bioconjugate Chemistry

      Volume: 29 Issue: 6 Pages: 1847-1851

    • DOI

      10.1021/acs.bioconjchem.8b00219

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic code expansion via integration of redundant amino acid assignment by finely tuning tRNA pools.2018

    • Author(s)
      Tajima K, Katoh T, Suga H.
    • Journal Title

      Curr Opin Chem Biol.

      Volume: 46 Pages: 212-218

    • DOI

      10.1016/j.cbpa.2018.07.010

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Max‐Bergmann award lecture:A RaPID way to discover bioactive nonstandard peptides assisted by the flexizyme and FIT systems2018

    • Author(s)
      Suga H
    • Journal Title

      Journal of Peptide Science

      Volume: 24 Issue: 1

    • DOI

      10.1002/psc.3055

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Non-competitive cyclic peptides for targeting enzyme?substrate complexes2018

    • Author(s)
      McAllister T. E.、Yeh T.-L.、Abboud M. I.、Leung I. K. H.、Hookway E. S.、King O. N. F.、Bhushan B.、Williams S. T.、Hopkinson R. J.、M?nzel M.、Loik N. D.、Chowdhury R.、Oppermann U.、Claridge T. D. W.、Goto Y.、Suga H.、Schofield C. J.、Kawamura A.
    • Journal Title

      Chemical Science

      Volume: 9 Issue: 20 Pages: 4569-4578

    • DOI

      10.1039/c8sc00286j

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate.2018

    • Author(s)
      Bacusmo JM, Kuzmishin AB, Cantara WA, Goto Y, Suga H, Musier-Forsyth K.
    • Journal Title

      RNA Biol.

      Volume: 15 Issue: 4-5 Pages: 576-585

    • DOI

      10.1080/15476286.2017.1353846

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ribosomal Incorporation of Consecutive beta-Amino Acids.2018

    • Author(s)
      Katoh T, Suga H.
    • Journal Title

      J Am Chem Soc.

      Volume: 140 Issue: 38 Pages: 12159-12167

    • DOI

      10.1021/jacs.8b07247

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids.2018

    • Author(s)
      Rogers JM, Kwon S, Dawson SJ, Mandal PK, Suga H, Huc I.
    • Journal Title

      Nat Chem.

      Volume: 10 Issue: 4 Pages: 405-412

    • DOI

      10.1038/s41557-018-0007-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure-activity studies of a macrocyclic peptide inhibitor of histone lysine demethylase 4A.2018

    • Author(s)
      Passioura T, Bhushan B, Tumber A, Kawamura A, Suga H.
    • Journal Title

      Bioorg Med Chem.

      Volume: 26 Issue: 6 Pages: 1225-1231

    • DOI

      10.1016/j.bmc.2018.01.013

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Thioether Macrocyclic Peptides Selected against TET1 Compact Catalytic Domain Inhibit TET1 Catalytic Activity2018

    • Author(s)
      Nishio Kosuke、Belle Roman、Katoh Takayuki、Kawamura Akane、Sengoku Toru、Hanada Kazuharu、Ohsawa Noboru、Shirouzu Mikako、Yokoyama Shigeyuki、Suga Hiroaki
    • Journal Title

      ChemBioChem

      Volume: 19 Issue: 9 Pages: 979-985

    • DOI

      10.1002/cbic.201800047

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] tRNA engineering for manipulating genetic code.2018

    • Author(s)
      Katoh T, Iwane Y, Suga H.
    • Journal Title

      RNA Biol.

      Volume: 15 Pages: 453-460

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Logical engineering of D-arm and T-stem of tRNA that enhances d-amino acid incorporation.2017

    • Author(s)
      Katoh T, Iwane Y, Suga H.
    • Journal Title

      Nucleic Acids Res.

      Volume: 45 Issue: 22 Pages: 12601-12610

    • DOI

      10.1093/nar/gkx1129

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Strategies for transitioning macrocyclic peptides to cell-permeable drug leads Journal: Current Opinion in Biotechnology2017

    • Author(s)
      L.J. Walport, R. Obexer, H. Suga
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 48 Pages: 242-250

    • DOI

      10.1016/j.copbio.2017.07.007

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] tRNA engineering for manipulating genetic code2017

    • Author(s)
      Katoh Takayuki、Iwane Yoshihiko、Suga Hiroaki
    • Journal Title

      RNA Biol.

      Volume: 0 Issue: 4-5 Pages: 1-8

    • DOI

      10.1080/15476286.2017.1343227

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Macrocyclic peptide inhibitors for the protein-protein interaction of Zaire Ebola virus protein 24 and karyopherin alpha 5.2017

    • Author(s)
      Song X, Lu LY, Passioura T, Suga H.
    • Journal Title

      Org Biomol Chem.

      Volume: 15 Issue: 24 Pages: 5155-5160

    • DOI

      10.1039/c7ob00012j

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Exploring sequence space: harnessing chemical and biological diversity towards new peptide leads2017

    • Author(s)
      R. Obexer, L.J. Walport, H. Suga
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 38 Pages: 52-61

    • DOI

      10.1016/j.cbpa.2017.02.020

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rapid Discovery of Potent and Selective Glycosidase-Inhibiting De Novo Peptides2017

    • Author(s)
      Jongkees Seino A.K.、Caner Sami、Tysoe Christina、Brayer Gary D.、Withers Stephen G.、Suga Hiroaki
    • Journal Title

      Cell Chem Biol.

      Volume: 24 Issue: 3 Pages: 381-390

    • DOI

      10.1016/j.chembiol.2017.02.001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Consecutive Elongation of D-Amino Acids in Translation.2017

    • Author(s)
      Katoh T, Tajima K, Suga H.
    • Journal Title

      Cell Chem Biol

      Volume: 24 Issue: 1 Pages: 46-54

    • DOI

      10.1016/j.chembiol.2016.11.012

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A RaPID way to discover nonstandard macrocyclic peptide modulators of drug targets.2017

    • Author(s)
      Passioura T and Suga H
    • Journal Title

      Chem Commun (Camb)

      Volume: 53 Issue: 12 Pages: 1931-1940

    • DOI

      10.1039/c6cc06951g

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Ribosome-mediated synthesis of natural product-like peptides via cell-free translation2016

    • Author(s)
      Rumit Maini
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 34 Pages: 44-52

    • DOI

      10.1016/j.cbpa.2016.06.006

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A human microRNA precursor binding to folic acid discovered by small RNA transcriptomic SELEX.2016

    • Author(s)
      Naohiro Terasaka, Kazuki Futai, Takayuki Katoh, Hiroaki Suga.
    • Journal Title

      RNA

      Volume: 22 Issue: 12 Pages: 1918-1928

    • DOI

      10.1261/rna.057737.116

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Essential structural elements in tRNAPro for EF-P-mediated alleviation of translation stalling2016

    • Author(s)
      Katoh Takayuki、Wohlgemuth Ingo、Nagano Masanobu、Rodnina Marina V.、Suga Hiroaki
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 11657-11657

    • DOI

      10.1038/ncomms11657

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Expanding the amino acid repertoire of ribosomal polypeptide synthesis via the artificial division of codon boxes2016

    • Author(s)
      Yoshihiko Iwane, Azusa Hitomi, Hiroshi Murakami, Takayuki Katoh, Yuki Goto, and Hiroaki Suga
    • Journal Title

      Nature Chemistry

      Volume: 8 Issue: 4 Pages: 317-325

    • DOI

      10.1038/nchem.2446

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] tRid, an enabling method to isolate previously inaccessible small RNA fractions.2016

    • Author(s)
      Kazuki Futai, Naohiro Terasaka, Takayuki Katoh, Hiroaki Suga.
    • Journal Title

      Methods

      Volume: 106 Pages: 105-111

    • DOI

      10.1016/j.ymeth.2016.04.033

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A fluorescent imaging probe based on a macrocyclic scaffold that binds to cellular EpCAM2015

    • Author(s)
      Iwasaki, K. Goto, Y. Katoh, T. Yamashita, T. Kaneko, S. Suga, H.
    • Journal Title

      J Mol Evol

      Volume: 81 Issue: 5-6 Pages: 210-217

    • DOI

      10.1007/s00239-015-9710-z

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Synthesis of fused tricyclic peptides using a reprogrammed translation system and chemical modification.2015

    • Author(s)
      N.K. Bashiruddin; M. Nagano; H. Suga
    • Journal Title

      Bioorganic chemistry

      Volume: 61 Pages: 45-50

    • DOI

      10.1016/j.bioorg.2015.06.002

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recent Developments of Engineered Translational Machineries for the Incorporation of Non-Canonical Amino Acids into Polypeptides2015

    • Author(s)
      Naohiro Terasaka, Yoshihiko Iwane, Anna-Skrollan Geiermann, Yuki Goto & Hiroaki Suga
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 16 Issue: 3 Pages: 6513-6531

    • DOI

      10.3390/ijms16036513

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Artificial human Met agonists based on macrocycle scaffolds2015

    • Author(s)
      Ito K, Sakai K, Suzuki Y, Ozawa N, Hatta T, Natsume T, Matsumoto K, Suga H.
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6373-6373

    • DOI

      10.1038/ncomms7373

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Selection-based discovery of macrocyclic peptides for the next generation therapeutics.2015

    • Author(s)
      T. Morioka; N.D. Loik; C.J. Hipolito; Y. Goto; H. Suga
    • Journal Title

      Current opinion in chemical biology

      Volume: 26C Pages: 34-41

    • DOI

      10.1016/j.cbpa.2015.01.023

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reprogramming the genetic code in vitro2014

    • Author(s)
      T. Passioura; H. Suga
    • Journal Title

      Trends in Biochemical Sciences

      Volume: 39 Issue: 9 Pages: 400-408

    • DOI

      10.1016/j.tibs.2014.07.005

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Construction and screening of vast libraries of natural product-like macrocyclic peptides using in vitro display technologies2014

    • Author(s)
      N.K. Bashiruddin; H. Suga
    • Journal Title

      Current Opinion in Chemical Biology

      Volume: 24C Pages: 131-138

    • DOI

      10.1016/j.cbpa.2014.11.011

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] The RaPID discovery of bioactive pseudo-natural peptides2018

    • Author(s)
      H Suga
    • Organizer
      CHI's 13th Annual Drug Discovery Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] "The RaPID way to discover bioactive pseudo-natural peptides with macrocyclic scaffold"2018

    • Author(s)
      H Suga
    • Organizer
      The Protein Society Annual Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID way to discover bioactive macrocyclic peptides expressed under the reprogrammed genetic code2018

    • Author(s)
      H Suga
    • Organizer
      2018 Genetic Code Espansion Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Revolutionizing the discovery process of peptide drug leads2018

    • Author(s)
      H Suga
    • Organizer
      Nature Conference on Chemical Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID Discovery of Bioactive Pseudo-Natural Peptides2018

    • Author(s)
      H Suga
    • Organizer
      1st Japanese-German Symposium Biosynthesis and Function of Natural Products
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Revolutionizing the discovery process of bioactive peptides2018

    • Author(s)
      H Suga
    • Organizer
      Basel Life 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID System That Has Revolutionized the Discovery Process of Peptide Therapeutics2018

    • Author(s)
      H Suga
    • Organizer
      ACS Publications Symposium: Innovation at the Frontier of Chemistry and Life Science
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID way to discover bioactive pseudo-natural macrocycles2018

    • Author(s)
      H Suga
    • Organizer
      10th International Peptide Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Macrocyclic pseudo-natural peptides for anti-cancer therapies2018

    • Author(s)
      H Suga
    • Organizer
      11th AACR-JCA Joint Conference on Breakthroughs in Cancer Research: Biology to Precision Medicine
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 擬天然ペプチドのリボソーム型生体外発現に関する最近の研究成果2018

    • Author(s)
      H Suga
    • Organizer
      AsiaTIDES: Oligonucleotide & Peptide Therapeutics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] From constrained peptides to biologics2018

    • Author(s)
      H Suga
    • Organizer
      The Festival of Biologics San Diego
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetic code reprogramming assisted by flexizymes and pseudo-natural peptide discovery2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      AARS2017 (2017 IUBMB Focused Meeting on Aminoacyl-tRNA Synthetases
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID discovery of bioactive pseudo-natural peptides2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      Nanoscience Days 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover pseudo-natural peptides for therapeutic uses2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      11th International Symposium of Bioorganic Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover bioactive pseudo-natural peptides2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      26th French-Japanese Symposium on Medicinal and Fine Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RaPID Way to Discover Pseudo-natural Peptides for Therapeutic Uses2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      GDCh Scientific Forum Chemistry 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Inorporation of nonproteinogenic amino acids into polypeptides from protein functional studies to drug discovery2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      The Ins-and-Outs of Membrane Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID Way to Discover Pseudo-natural Peptides2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      7th Symposium on Advances in Synthetic and Medicinal
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover pseudo-natural peptides and products Discussion2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      Benzon Symposium 63-New Paradigms of Protein Engineering-Applications in Modern Medicine
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The RaPID Discovery of Pseudo-Natural Peptides2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      25th American Peptide Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] One-Pot Synthesis and Screening of Pseudo-Natural Peptides and Products2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      2017 Bioorganic Chemistry Gordon Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID Way to Discover Pseudo-natural Peptides and Products for Therapeutic Uses2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      Dutch peptide symposium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Translation-coupled in vitro reconstitution of pseudo-natural peptide biosynthesis2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      9th US-Japan Seminar on the Biosynthesis of Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID Way to Discover Bioactive Pseudo-Natural Peptides2017

    • Author(s)
      Hiroaki Suga
    • Organizer
      Perspectives in Molecular Pharmacology 25 Years FMP
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nomtraditional peptides and pseudo-natural products2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      The 8th Takeda Science Foundation International Symposium on PharmaSciences
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive pseudo-naturla peptides2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      Banyu-Fukuoka Symposium
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive pseudo-naturla peptides2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      International RNA meeting 2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover bioactive pseudo-naturla peptides2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      EMBO Conference-Chemical Biology 2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover pseudo-natural peptides for therapeutic uses2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      EMBO Conference-Chemical Biology
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover pseudo-natural peptides for therapeutic uses2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      Gold Medal Awardee Lecture, Max-Bergmann Conference 2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vitro synthetic biology of the ribosome and genetic code: From basic science to applied research2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      Symposium on the Genetics of Industrial Microorganisms GIM2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way to discover pseudo-natural products & peptides for therapeutic uses2016

    • Author(s)
      Hiroaki Suga
    • Organizer
      The 1st international PSL Chemical Biology Symposium 2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Rapid way for the discovery of macrocyclic peptide drug leads:RaPID way to discover PPI agonists and antagonists2015

    • Author(s)
      菅 裕明
    • Organizer
      The Innternational chemical congress of Pacific Basin Societies 2015
    • Place of Presentation
      Hawaii Convention Center, Honolulu, Hawaii USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 特殊ペプチド創薬イノベーション:創薬のゲームチェンジを目指して2015

    • Author(s)
      菅 裕明
    • Organizer
      BMB2015
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市中央区島中町)、日本
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Drug-like non-canonical cyclic peptides selected from diverse libraries2015

    • Author(s)
      菅 裕明
    • Organizer
      The third edition of the International Conference on Circular Proteins(ICCP2015)
    • Place of Presentation
      Moreton island, at the Tangalooma Resort, Australia
    • Year and Date
      2015-11-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Ribosomal synthesis of highly N- and O-methylated cyclic peptide libraries for selection of protein-protein interaction inhibitors with “drug-like” characteristics.2015

    • Author(s)
      菅 裕明
    • Organizer
      The 11th Australian Peptide Conference
    • Place of Presentation
      Peppers Salt Resort & Spa, Australia
    • Year and Date
      2015-10-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way for the discovery of pseud-natural products2015

    • Author(s)
      菅 裕明
    • Organizer
      36th National Organic Chemistry Congress
    • Place of Presentation
      Alma Mater Studiorum University, Bologna, Italy
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Pseudo-Natural Products and Peptides for Therapeutic Applications2015

    • Author(s)
      菅 裕明
    • Organizer
      High Throughput Chemistry & Chemical Biology(GordonResearch Conference)
    • Place of Presentation
      Colby-Sawyer College, New London, NH USA
    • Year and Date
      2015-06-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A RaPID way for the discovery of pseud-natural products and its innovation2015

    • Author(s)
      菅 裕明
    • Organizer
      Organic Chemistry Symposium(Royal Society of Chemistry Roadshow)
    • Place of Presentation
      東京大学 武田ホール(東京都文京区弥生)、日本
    • Year and Date
      2015-06-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 特殊ペプチド創薬イノベーション2015

    • Author(s)
      菅 裕明
    • Organizer
      Joint International Symposium on TGF-beta and Cancer
    • Place of Presentation
      筑波国際会議場、日本
    • Year and Date
      2015-01-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive macrocyclic peptides2014

    • Author(s)
      菅 裕明
    • Organizer
      Asian Chemical Biology Symposium
    • Place of Presentation
      Education Resource Centre, Singapore
    • Year and Date
      2014-12-15
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive macrocyclic peptides2014

    • Author(s)
      菅 裕明
    • Organizer
      Cold Spring Harbor Asia "Synthetic Biology"
    • Place of Presentation
      Suzhou Dushu Lake Conference Center, Suzhou, China
    • Year and Date
      2014-12-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive macrocyclic Scafforld and its Innovation2014

    • Author(s)
      菅 裕明
    • Organizer
      Joint symposium of the Institute of Convergent Technology at Seoul National University and the Research Center for Advanced Science and Technology at the University of Tokyo
    • Place of Presentation
      Conference RoomI, AICT, Suwon, Korea
    • Year and Date
      2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 特殊ペプチド創薬イノベーション2014

    • Author(s)
      菅 裕明
    • Organizer
      第51回ペプチド討論会
    • Place of Presentation
      徳島大学大塚講堂、日本
    • Year and Date
      2014-10-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A RaPID way to discover bioactive macrocyclic peptides2014

    • Author(s)
      菅 裕明
    • Organizer
      Switzerland-Japan Chemical Biology Symposium
    • Place of Presentation
      University of Bern, Switzerland
    • Year and Date
      2014-10-02
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 特殊ペプチド創薬イノベーション2014

    • Author(s)
      菅 裕明
    • Organizer
      The Origin 2014
    • Place of Presentation
      奈良県新公会堂、日本
    • Year and Date
      2014-07-23
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Pseudo-Natural Product Synthesis and Drug Applications2014

    • Author(s)
      菅 裕明
    • Organizer
      International Conference on Medicinal Chemistry 2014
    • Place of Presentation
      Rouen's Law Faculty meeting room, Rouen, France
    • Year and Date
      2014-07-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A novel drug discovery platform technology fro "Nontraditional" molecules2014

    • Author(s)
      菅 裕明
    • Organizer
      Pre-COST meeting “Innovation”
    • Place of Presentation
      Universita Degli Studi Firenze, Siena, Italy
    • Year and Date
      2014-06-25
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] In Vitro Biophynthesis and Discovery of Pseudo-nutural Products2014

    • Author(s)
      菅 裕明
    • Organizer
      Chemical Biology meets Drug Discovery meeting, Royal Society of Chemistry
    • Place of Presentation
      Lilly Research Centre Erl Wood Manor, Surrey, UK
    • Year and Date
      2014-06-12
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 特殊ペプチド創薬イノベーション2014

    • Author(s)
      菅 裕明
    • Organizer
      日本ケミカルバイオロジー学会第9回年会
    • Place of Presentation
      大阪大学 豊中キャンパス、日本
    • Year and Date
      2014-06-11
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Remarks] 東京大学大学院理学系研究科化学専攻菅研究室ホームページ

    • URL

      https://www.chem.s.u-tokyo.ac.jp/users/bioorg/index.html

    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 多種の非タンパク質性アミノ酸を利用できるカスタムメイドペプチド翻訳合成系2018

    • Inventor(s)
      菅 裕明,加藤 敬行,岩根 由彦
    • Industrial Property Rights Holder
      菅 裕明,加藤 敬行,岩根 由彦
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] D-アミノ酸及びβ-アミノ酸の取り込みを増強するtRNAのD及びTアームの改変2018

    • Inventor(s)
      菅 裕明,加藤 敬行
    • Industrial Property Rights Holder
      菅 裕明,加藤 敬行
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
    • Overseas

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Published: 2014-06-05   Modified: 2023-03-23  

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