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RNA modifications associated with biological processes

Research Project

Project/Area Number 26220205
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biomolecular chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Suzuki Tsutomu  東京大学, 大学院工学系研究科(工学部), 教授 (20292782)

Project Period (FY) 2014-05-30 – 2019-03-31
Project Status Discontinued (Fiscal Year 2018)
Budget Amount *help
¥195,260,000 (Direct Cost: ¥150,200,000、Indirect Cost: ¥45,060,000)
Fiscal Year 2018: ¥33,410,000 (Direct Cost: ¥25,700,000、Indirect Cost: ¥7,710,000)
Fiscal Year 2017: ¥33,410,000 (Direct Cost: ¥25,700,000、Indirect Cost: ¥7,710,000)
Fiscal Year 2016: ¥33,410,000 (Direct Cost: ¥25,700,000、Indirect Cost: ¥7,710,000)
Fiscal Year 2015: ¥44,590,000 (Direct Cost: ¥34,300,000、Indirect Cost: ¥10,290,000)
Fiscal Year 2014: ¥50,440,000 (Direct Cost: ¥38,800,000、Indirect Cost: ¥11,640,000)
KeywordsRNA修飾 / tRNA / リボソーム / タンパク質合成 / マススペクトロメトリー / エピトランスクリプトミクス / RNA修飾病 / tRNA, mRNA, rRNA / RNAマススペクトロメトリー / tRNA修飾 / f5C修飾 / 遺伝暗号の解読 / ht6A修飾 / ミトコンドリアタンパク質合成系 / pre-tRNA capping / N4アセチルシチジン / rRNA
Outline of Final Research Achievements

This project aimed to reveal biological processes mediated by RNA modifications. We discovered a cap-specific novel m6A writer for mRNA, and an RNA acetyltransferase using an acetate ion as a substrate. We studied CO2-sensitive tRNA modification and its association with Warburg effect, found dynamic regulation of tRNA modification by sensing cellular metabolic status, and reported pre-tRNA capping. We also showed that a single methylation of 23S rRNA plays a critical role in ribosomal 50S subunit assembly in the late stage. We elucidated biogenesis of 5-formylcytidine in human mitochondrial tRNA. These observations contribute to our deep understanding of functional and physiological roles of RNA modifications as epitranscriptome marks.

Academic Significance and Societal Importance of the Research Achievements

本研究において、私たちは、RNA修飾が関与する生命現象の理解とその分子機構を探求している。特に、RNA修飾が欠損することがヒトの疾患の原因となることを世界で初めて示し、RNA修飾病(RNA modopathy)という疾患の新しいカテゴリーを提唱した。ヒトのミトコンドリアtRNA修飾の生合成機構を研究する過程で、tRNA修飾の欠損がミトコンドリア病の原因であることを突き止め、具体的な治療法や創薬のための基盤的知見を提供している。

Assessment Rating
Verification Result (Rating)

A+

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(9 results)
  • 2019 Research Progress Assessment (Verification Result) ( PDF )
  • 2018 Final Research Report ( PDF )
  • 2017 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Abstract ( PDF )   Annual Research Report
  • Research Products

    (105 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (17 results) Journal Article (43 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 43 results,  Open Access: 27 results,  Acknowledgement Compliant: 22 results) Presentation (31 results) (of which Int'l Joint Research: 16 results,  Invited: 30 results) Book (6 results) Remarks (8 results)

  • [Int'l Joint Research] IMB-Mainz(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Univ of Texas Health Science Center(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] 浙江大学(中国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Tartu(エストニア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] UC Santa Cruz(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Lodz University of Technology(ポーランド)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Ohio State University(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 浙江大学(中国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Queen's University(カナダ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Ben-Gurion University of the Negev(イスラエル)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Lodz University of Technology(ポーランド)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Ohio State University(米国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] 浙江大学(中国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Queen's University(カナダ)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Ben-Gurion University of the Negev(イスラエル)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Defective Mitochondrial tRNA Taurine Modification Activates Global Proteostress and Leads to Mitochondrial Disease.2018

    • Author(s)
      Fakruddin M, Wei FY, Suzuki T, Asano K, Kaieda T, Omori A, Izumi R, Fujimura A, Kaitsuka T, Miyata K, Araki K, Oike Y, Scorrano L, Suzuki T, Tomizawa K.
    • Journal Title

      Cell Rep.

      Volume: 22 Issue: 2 Pages: 482-496

    • DOI

      10.1016/j.celrep.2017.12.051

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease2018

    • Author(s)
      Asano Kana、Suzuki Takeo、Saito Ayaka、Wei Fan-Yan、Ikeuchi Yoshiho、Numata Tomoyuki、Tanaka Ryou、Yamane Yoshihisa、Yamamoto Takeshi、Goto Takanobu、Kishita Yoshihito、Murayama Kei、Ohtake Akira、Okazaki Yasushi、Tomizawa Kazuhito、Sakaguchi Yuriko、Suzuki Tsutomu
    • Journal Title

      Nucleic Acids Res.

      Volume: 46 Issue: 4 Pages: 1565-1583

    • DOI

      10.1093/nar/gky068

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The ribosomal A-site finger is crucial for binding and activation of the stringent factor RelA2018

    • Author(s)
      Kudrin, P., Dzhygyr, I., Ishiguro, K., Beljantseva, J., Maksimova, E., Sofia Raquel Alves Oliveira, Varik, V., Payoe, R., Konevega, A., Tenson, T., Suzuki, T. and Hauryliuk, V.
    • Journal Title

      Nucleic Acids Res.

      Volume: 46 Issue: 4 Pages: 1973-1983

    • DOI

      10.1093/nar/gky023

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA2018

    • Author(s)
      Matsuda, S., *Yasukawa, T., Sakaguchi, Y., Ichiyanagi, K., Unoki, M., Gotoh, K., Fukuda, K., Sasaki, H., Suzuki, T. and Kang, D.
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 5801-5801

    • DOI

      10.1038/s41598-018-24251-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CO2-sensitive tRNA modification associated with human mitochondrial disease2018

    • Author(s)
      Lin, H., Kenjyo, M., Harada, T., Okita, R., Takeshita, E., Komaki, H., Yagasaki, H., Fujioka, K., Goto, Y., Yanaka, K., Nakagawa, S., Sakaguchi, Y. and *Suzuki, T.
    • Journal Title

      Nature Commun.

      Volume: in press Issue: 1 Pages: 1875-1875

    • DOI

      10.1038/s41467-018-04250-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RNA editing enzyme ADAR2 is a mediator of neuropathic pain after peripheral nerve injury.2017

    • Author(s)
      Uchida H, Matsumura S, Okada S, Suzuki T, Minami T and Ito S
    • Journal Title

      FASEB Journal

      Volume: 印刷中 Issue: 5 Pages: 1847-1855

    • DOI

      10.1096/fj.201600950r

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Human BCDIN3D Monomethylates Cytoplasmic Histidine Transfer RNA.2017

    • Author(s)
      Martinez A, Yamashita S, Nagaike T, Sakaguchi Y, Suzuki T, Tomita K
    • Journal Title

      Nucleic Acids Res

      Volume: - Pages: 5423-5436

    • DOI

      10.1093/nar/gkx051

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ALKBH1 is an RNA dioxygenase responsible for cytoplasmic and mitochondrial tRNA modifications2017

    • Author(s)
      Kawarada Layla、Suzuki Takeo、Ohira Takayuki、Hirata Shoji、Miyauchi Kenjyo、Suzuki Tsutomu
    • Journal Title

      Nucleic Acids Res.

      Volume: 45 Issue: 12 Pages: 7401-7415

    • DOI

      10.1093/nar/gkx354

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA2017

    • Author(s)
      Chen Minghao、Asai Shin-ichi、Narai Shun、Nambu Shusuke、Omura Naoki、Sakaguchi Yuriko、Suzuki Tsutomu、Ikeda-Saito Masao、Watanabe Kimitsuna、Yao Min、Shigi Naoki、Tanaka Yoshikazu
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Issue: 19 Pages: 4954-4959

    • DOI

      10.1073/pnas.1615585114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria2017

    • Author(s)
      Nagao, A., Ohara, M., Miyauchi, K., Yokobori, S., Yamagishi, A., Watanabe, K. and *Suzuki, T.
    • Journal Title

      Nature Structural & Molecular Biology

      Volume: 24 Issue: 9 Pages: 778-782

    • DOI

      10.1038/nsmb.3449

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intrinsic Ribosome Destabilization Underlies Translation and Provides an Organism with a Strategy of Environmental Sensing2017

    • Author(s)
      Chadani Yuhei、Niwa Tatsuya、Izumi Takashi、Sugata Nobuyuki、Nagao Asuteka、Suzuki Tsutomu、Chiba Shinobu、Ito Koreaki、Taguchi Hideki
    • Journal Title

      Molecular Cell

      Volume: 68 Issue: 3 Pages: 528-539

    • DOI

      10.1016/j.molcel.2017.10.020

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biogenesis and iron-dependency of ribosomal RNA hydroxylation2017

    • Author(s)
      Kimura, S., Sakai, Y., Ishiguro, K. and Suzuki, T.
    • Journal Title

      Nucleic Acids Res.

      Volume: 45 Issue: 22 Pages: 12974-12986

    • DOI

      10.1093/nar/gkx969

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] S -Adenosylmethionine Synthesis Is Regulated by Selective N 6 -Adenosine Methylation and mRNA Degradation Involving METTL16 and YTHDC12017

    • Author(s)
      Shima Hiroki、Matsumoto Mitsuyo、Ishigami Yuma、Ebina Masayuki、Muto Akihiko、Sato Yuho、Kumagai Sayaka、Ochiai Kyoko、Suzuki Tsutomu、Igarashi Kazuhiko
    • Journal Title

      Cell Rep.

      Volume: 21 Issue: 12 Pages: 3354-3363

    • DOI

      10.1016/j.celrep.2017.11.092

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs2017

    • Author(s)
      Matuszewski, M., Wojciechowski, J., Miyauchi, K., Gdaniec, Z., Wolf, W. M., Suzuki, T. and Sochacka, E
    • Journal Title

      Nucleic Acids Res

      Volume: 45 Issue: 4 Pages: 2137-2149

    • DOI

      10.1093/nar/gkw1189

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs2017

    • Author(s)
      Kang, B. I., Miyauchi, K., Matuszewski, M., D'Almeida, G. S., Rubio, M. A., Alfonzo, J. D., Inoue, K., Sakaguchi, Y., Suzuki, T., Sochacka, E., Suzuki, T.
    • Journal Title

      Nucleic Acids Res

      Volume: 45 Issue: 4 Pages: 2124-2136

    • DOI

      10.1093/nar/gkw1120

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases2017

    • Author(s)
      Currie, M. A., Brown, G., Wong, A., Ohira, T., Sugiyama, K., Suzuki, T.,Yakunin, A. F., and Jia, Z
    • Journal Title

      RNA

      Volume: 23 Issue: 3 Pages: 346-354

    • DOI

      10.1261/rna.057943.116

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Duplication of Drosophila melanogaster mitochondrial EF-Tu: pre-adaptation to T-arm truncation and exclusion of bulky aminoacyl residues2017

    • Author(s)
      Sato, A., Suematsu, T., Aihara, K., Kita, K., Suzuki, T., Watanabe, K., Ohtsuki, T. and Watanabe, Y.
    • Journal Title

      Biochem. J.

      Volume: 474 Issue: 6 Pages: 957-969

    • DOI

      10.1042/bcj20160929

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA modifications: what have we learned and where are we headed?2016

    • Author(s)
      Frye, M., Jaffrey, S., Pan, T., Rechavi, G. and Suzuki, T.
    • Journal Title

      Nature Rev Genet

      Volume: 17 Issue: 6 Pages: 365-372

    • DOI

      10.1038/nrg.2016.47

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] NSUN3 methylase initiates 5-formylcytidine biogenesis in human mitochondrial tRNA(Met)2016

    • Author(s)
      Nakano, S., Suzuki, T., Kawarada, L., Iwata, H., Asano, K., Suzuki, T.
    • Journal Title

      Nat Chem Biol

      Volume: 12 Issue: 7 Pages: 546-51

    • DOI

      10.1038/nchembio.2099

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Precursors of tRNAs are stabilized by methylguanosine cap structures.2016

    • Author(s)
      Ohira T, Suzuki T
    • Journal Title

      Nat Chem Biol.

      Volume: 12 Issue: 8 Pages: 648-55

    • DOI

      10.1038/nchembio.2117

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates2016

    • Author(s)
      Bar-Yaacov D, Frumkin I, Yashiro Y, Chujo T, Ishigami Y, Chemla Y, Blumberg A, Schlesinger O, Bieri P, Greber B, Ban N, Zarivach R, Alfonta L, Pilpel Y, Suzuki T, Mishmar D.
    • Journal Title

      PLoS Biology

      Volume: - Issue: 9 Pages: e1002557-e1002557

    • DOI

      10.1371/journal.pbio.1002557

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mtu1-mediated thiouridine formation of mitochondrial tRNAs is required for mitochondrial translation and is involved in reversible infantile liver injury2016

    • Author(s)
      Wu, Y., Wei, F. Y., Kawarada, L., Suzuki, T., Araki, K., Komohara, Y., Fujimura, A., Kaitsuka, T., Takeya, M., Oike, Y., Suzuki, T., Tomizawa, K.
    • Journal Title

      PLoS genetics

      Volume: 12 Issue: 9 Pages: e1006355-e1006355

    • DOI

      10.1371/journal.pgen.1006355

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A comprehensive genomic analysis reveals the genetic landscape of mitochondrial respiratory chain deficiency.2016

    • Author(s)
      Kohda M, Mizuno Y, Hirata T, Yatsuka Y, Yamashita, Okuda A, Borna NN, Banshoya K, Ohnuma K, Suzuki T, Nagao A, Maehata H, Matsuda F, Higasa K, Nagasaki M, Yasuda J, Yamamoto M, Fushimi T, Shimura M, Kaiho-Ichimoto K, Harashima H, Yamazaki T, Mori M, Murayama K, Ohtake A, Okazaki Y.
    • Journal Title

      PLoS Genetics:

      Volume: 12(1) Issue: 1 Pages: e1005679-e1005679

    • DOI

      10.1371/journal.pgen.1005679

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons2016

    • Author(s)
      Yusuke Sakai, Kenjyo Miyauchi, Satoshi Kimura, Tsutomu Suzuki
    • Journal Title

      Nucleic Acids Research

      Volume: 44 Issue: 2 Pages: 509-523

    • DOI

      10.1093/nar/gkv1470

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms2016

    • Author(s)
      Izumi, N., Shoji, K., Sakaguchi, Y., Honda, S., Kirino, Y., Suzuki, T., Katsuma, S. and Tomari, Y.
    • Journal Title

      Cell

      Volume: 164 Pages: 962-973

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Iron-sulfur proteins responsible for RNA modifications2015

    • Author(s)
      Kimura S., Suzuki T.
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1853 Issue: 6 Pages: 1272-1283

    • DOI

      10.1016/j.bbamcr.2014.12.010

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Defining fundamental steps in the assembly of Drosophila RNAi enzyme complex2015

    • Author(s)
      Shintaro Iwasaki, Hiroshi M. Sasaki, Yuriko Sakaguchi, Tsutomu Suzuki, Hisashi Tadakuma, & Yukihide Tomari
    • Journal Title

      Nature

      Volume: NA Issue: 7553 Pages: 0-0

    • DOI

      10.1038/nature14254

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method2015

    • Author(s)
      Suzuki, T., Ueda, H., Okada, S. and Sakurai, M.
    • Journal Title

      Nature Protocol

      Volume: 10 Issue: 5 Pages: 715-732

    • DOI

      10.1038/nprot.2015.037

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Biochemical and transcriptome-wide identification of A-to-I RNA editing sites by ICE-seq2015

    • Author(s)
      Okada, S., Sakurai, M., Ueda, H. and Suzuki, T.
    • Journal Title

      Methods in Enzymol

      Volume: 560 Pages: 331-353

    • DOI

      10.1016/bs.mie.2015.03.014

    • ISBN
      9780128021927
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Nucleoside analysis by hydrophilic interaction liquid chromatography coupled with mass spectrometry2015

    • Author(s)
      Sakaguchi, Y., Miyauchi, K., Kang, B. and Suzuki, T.
    • Journal Title

      Methods in Enzymol

      Volume: 560 Pages: 19-28

    • DOI

      10.1016/bs.mie.2015.03.015

    • ISBN
      9780128021927
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ribosomal RNA methyltransferases contribute to Staphylococcus aureus virulence2015

    • Author(s)
      Kyuma T, Kimura S, Hanada Y, Suzuki T, Sekimizu K, Kaito C
    • Journal Title

      FEBS J.

      Volume: 282 Issue: 13 Pages: 2570

    • DOI

      10.1111/febs.13302

    • URL

      https://pure.teikyo.jp/en/publications/fc32efa5-06e5-4013-80a5-f23105024de8

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] RlmCD-mediated U747 methylation promotes efficient G748 methylation by methyltransferase RlmAⅡ in 23S rRNA in Streptococcus pneumoniae; interplay between two rRNA methylations responsible for telithromycin susceptibility.2015

    • Author(s)
      Shoji T, Takaya A, Sato Y, Kimura S, Suzuki T, Yamamoto T
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Issue: 18 Pages: 8964-72

    • DOI

      10.1093/nar/gkv609

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Destabilization of microRNA-122 in human cells by 3’ deadenylation mediated by PARN and CUGBP12015

    • Author(s)
      Katoh, T., Hojo, H. and Suzuki, T.
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Issue: 15 Pages: 7521-7534

    • DOI

      10.1093/nar/gkv669

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A single methylation of 23S rRNA triggers late steps of 50S ribosomal subunit assembly2015

    • Author(s)
      Arai, T., Ishiguro, K., Kimura, S., Sakaguchi, Y., Suzuki, T. and Suzuki, T.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 112 Issue: 34

    • DOI

      10.1073/pnas.1506749112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Regulation of gene expression via retrotransposon insertions and the noncoding RNA 4.5S RNAH.2015

    • Author(s)
      Ishida K, Miyauchi K, Kimura Y, Mito M, Okada S, Suzuki T, Nakagawa S.
    • Journal Title

      Genes Cells

      Volume: 20 Issue: 11 Pages: 887-901

    • DOI

      10.1111/gtc.12280

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Rectifier of aberrant mRNA splicing recovers tRNA modification in familial dysautonomia.2015

    • Author(s)
      Yoshida M, Kataoka N, Miyauchi K, Ohe K, Iida K, Yoshida S, Nojima T, Okuno Y, Onogi H, Usui T, Takeuchi A, Hosoya T, Suzuki T, Hagiwara M.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112(9) Issue: 9 Pages: 2764-2769

    • DOI

      10.1073/pnas.1415525112

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cdk5rap1-mediated 2-methylthio modification of mitochondrial tRNAs governs protein translation and contributes to myopathy in mice and humans.2015

    • Author(s)
      Wei FY, Zhou B, Suzuki T, Miyata K, Ujihara Y, Horiguchi H, Takahashi N, Xie P, Michiue H, Fujimura A, Kaitsuka T, Matsui H, Koga Y, Mohri S, Suzuki T, Oike Y, Tomizawa K.
    • Journal Title

      Cell Metab

      Volume: 21 Issue: 3 Pages: 413-6

    • DOI

      10.1016/j.cmet.2015.01.019

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs2014

    • Author(s)
      Suzuki T. and Suzuki T.
    • Journal Title

      Nucleic Acids Research

      Volume: (in press) Issue: 11 Pages: 7346-7357

    • DOI

      10.1093/nar/gku390

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Discovery of the b-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs2014

    • Author(s)
      Kimura S., Miyauchi K., Ikeuchi Y., Thiaville PC., Crecy-Lagard Vd., Suzuki T.
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 14 Pages: 9350-9365

    • DOI

      10.1093/nar/gku618

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A single acetylation of 18S rRNA is essential for biogenesis of the small ribosomal subunit in Saccharomyces cerevisiae2014

    • Author(s)
      Ito, S., Akamatsu, Y., Noma, A., Kimura, S., Miyauchi, K., Ikeuchi, Y., Suzuki, T. and Suzuki, T
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Issue: 38 Pages: 26201-26212

    • DOI

      10.1074/jbc.m114.593996

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Human NAT10 is an ATP-dependent RNA acetyltransferase responsible for N4-acetylcytidine formation in 18S rRNA2014

    • Author(s)
      Satoshi Ito, Sayuri Horikawa, Tateki Suzuki, Hiroki Kawauchi, Yoshikazu Tanaka, Takeo Suzuki, and Tsutomu Suzuki
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 289 Issue: 52 Pages: 35724-35730

    • DOI

      10.1074/jbc.c114.602698

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 5-Hydroxymethylcytosine plays a critical role in glioblastomagenesis by recruiting the CHTOP-Methylosome complex2014

    • Author(s)
      Hiroki Takai, Tetsu Akiyama et al.
    • Journal Title

      Cell Reports

      Volume: 9 Issue: 1 Pages: 48

    • DOI

      10.1016/j.celrep.2014.08.071

    • URL

      https://localhost/en/publications/faa4b7c1-5309-40ea-a2ad-a9e0a109b0d2

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Convergent evolution of AUA decoding in bacteria and archaea2014

    • Author(s)
      Tsutomu Suzuki and Tomoyuki Numata
    • Journal Title

      RNA Biology

      Volume: 11 Issue: 12 Pages: 1586-1596

    • DOI

      10.4161/15476286.2014.992281

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Molecular pathogenesis of mitochondrial disease caused by tRNA modification deficiency2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      FASEB science research conferences-Mitochondrial Biogenesis and Dynamics in Health, Disease and Aging
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular pathogenesis of human disease caused by tRNA modification deficiency2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      The 43rd Naito Conference- Noncoding RNA:Biology, Chemistry, & Diseases
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA修飾によるエピトランスクリプトーム制御と疾患2017

    • Author(s)
      鈴木 勉
    • Organizer
      千里ライフサイエンスセミナー: 生命を司り、操る~ノンコーディングRNAの底知れぬ力
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Metabolic regulation of tRNA modification associated with human disease2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      IMB symposium on Nucleic Acid Modification
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞内メタボライトを感知するRNA修飾と疾患2017

    • Author(s)
      鈴木 勉
    • Organizer
      IIBMP2017シンポジウム「ポストゲノム時代のRNAバイオロジー」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Metabolic regulation of RNA modification associated with human disease2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      Cold Spring Harbor Asia "RNA modification and epitranscriptome"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Metabolic regulation of RNA modification associated with human disease2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA mass spectrometry: a platform technology for emerging world of RNA modifications and epitranscriptome2017

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      第1回京都生体質量分析研究会シンポジウム
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA修飾によるエピトランスクリプトーム制御と疾患2017

    • Author(s)
      鈴木 勉
    • Organizer
      富山RNAワークショップ(富山大生命融合科学教育部セミナー)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Pre-tRNA capping in yeast and mammals2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      IBS-CNRS Joint RNA Symposium
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RNA修飾の多彩な機能と疾患2016

    • Author(s)
      鈴木 勉
    • Organizer
      国際高等研究所プロジェクト「生命活動を生体高分子への修飾から俯瞰する」平成27年度研究会
    • Place of Presentation
      国際高等研究所、京都府木津川市
    • Year and Date
      2016-02-09
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] RNAから病気の原因を探る2016

    • Author(s)
      鈴木 勉
    • Organizer
      東京大学化学生命工学専攻公開講座「化学生命工学―未来への挑戦-」
    • Place of Presentation
      東京大学本郷キャンパス、東京都文京区
    • Year and Date
      2016-01-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Molecular pathogenesis of human mitochondrial diseases associated with decoding disorder2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      RNA2016 satellite-symposium 'Nascent biology and Ribosome functions'
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Insights into molecular pathogenesis of mitochondrial diseases caused by tRNA modification deficiency2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      26th tRNA conference
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biogenesis and physiological role of 5-formylcytidine in human mitochondrial tRNA2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      RNA modifications and epitranscriptomics conference
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 翻訳初期段階におけるペプチジルtRNAの脱落と校正機構2016

    • Author(s)
      鈴木 勉
    • Organizer
      第89回日本生化学会大会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Molecular pathogenesis of mitochondrial diseases caused by tRNA modification deficiency2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      The 13th Conference of Asian Society for Mitochondrial Research and Medicine
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular pathogenesis of human diseases caused by RNA modification deficiency2016

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      第39回日本分子生物学会年会
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Post-transcriptional modifications in human mitochondrial tRNAs associated with pathological consequences2015

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      MitoClub
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular pathogenesis of mitochondrial disease caused by tRNA modification deficiency2015

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      12th Conference of the Asian Society of Mitochondrial Research and Medicine (ASMRM)
    • Place of Presentation
      Zhejiang, China
    • Year and Date
      2015-11-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular pathogenesis of mitochondrial disease caused by tRNA modification deficiency2015

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      MitoCross Symposium 2015: mitochondria at the crossroad
    • Place of Presentation
      Strasbourg, France
    • Year and Date
      2015-09-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] RlmE-mediated methylation of 23S rRNA triggers late steps of 50S ribosomal subunit assembly2015

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      EMBO Conference on Ribosome Synthesis
    • Place of Presentation
      Brussels, Belgium
    • Year and Date
      2015-08-19
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RNA修飾の多彩な機能と疾患2015

    • Author(s)
      鈴木 勉
    • Organizer
      名古屋市立大学薬学会特別講演会
    • Place of Presentation
      名古屋市立大、愛知県名古屋市
    • Year and Date
      2015-06-04
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 質量分析装置(MS)を使いこなす-核酸の修飾を見る-2015

    • Author(s)
      鈴木 勉
    • Organizer
      高知大学ESPO 教育プログラム
    • Place of Presentation
      高知大学、高知県高知市
    • Year and Date
      2015-06-03
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] RNA修飾の生合成と機能―硫黄代謝との関連を中心に―2015

    • Author(s)
      鈴木 勉
    • Organizer
      文部科学省 新学術領域研究(研究領域提案型)「酸素生物学」「第2回新学術領域技術支援セミナー」
    • Place of Presentation
      東北大学医学部、宮城県仙台市
    • Year and Date
      2015-04-30
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Essential RNA acetyltransferase required for ribosome biogenesis and tRNA modification2015

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      GRC on RNA editing and modification
    • Place of Presentation
      Lucca, Italy
    • Year and Date
      2015-03-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] RNA修飾の多彩な機能と疾患2015

    • Author(s)
      鈴木 勉
    • Organizer
      埼玉医科大学ゲノム医学研究センター学術集会
    • Place of Presentation
      埼玉医科大学ゲノム医学研究センター、埼玉県日高市
    • Year and Date
      2015-01-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Mitochondrial diseases caused by deficient tRNA modifications2014

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      AussieMit2014
    • Place of Presentation
      Perth, Australia
    • Year and Date
      2014-12-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] A single acetylation of 18S rRNA regulates ribosome biogenesis by sensing cellular energy status2014

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      Joint Australia and Japan RNA meeting (JAJRNA2014)
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2014-11-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Biogenesis and function of cyclic t6A and derivatives2014

    • Author(s)
      Tsutomu Suzuki
    • Organizer
      25th tRNA conference
    • Place of Presentation
      Kyllini, Greece
    • Year and Date
      2014-09-22
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ヒトはなぜ病気になるのでしょう?~病気の原因を分子レベルで探る~2014

    • Author(s)
      鈴木 勉
    • Organizer
      高校生のためのオープンキャンパス2014
    • Place of Presentation
      東京大学本郷キャンパス、東京
    • Year and Date
      2014-08-06
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] ミトコンドリアtRNA修飾の機能と疾患 (医学のあゆみ)2017

    • Author(s)
      鈴木 勉
    • Total Pages
      8
    • Publisher
      医歯薬出版株式会社
    • Related Report
      2016 Annual Research Report
  • [Book] RNA修飾のケミカルバイオロジー (現代化学4月号)2016

    • Author(s)
      鈴木 勉
    • Total Pages
      4
    • Publisher
      東京化学同人
    • Related Report
      2016 Annual Research Report
  • [Book] RNA修飾の多彩な機能と疾患 (ノンコーディングRNA-RNA分子の全体像を俯瞰する)2016

    • Author(s)
      鈴木 勉, 大平 高之
    • Total Pages
      39
    • Publisher
      化学同人
    • Related Report
      2016 Annual Research Report
  • [Book] RNAの修飾欠損と疾患2015

    • Author(s)
      鈴木 勉、浅野 奏、鈴木健夫
    • Total Pages
      5
    • Publisher
      ファルマシア(日本薬学会)
    • Related Report
      2015 Annual Research Report
  • [Book] 転写後過程におけるmiRNAの制御2015

    • Author(s)
      北條広朗、八代悠歌、鈴木 勉、
    • Total Pages
      4
    • Publisher
      実験医学(増刊)(羊土社)
    • Related Report
      2015 Annual Research Report
  • [Book] RNAの修飾欠損と疾患/ファルマシア2015

    • Author(s)
      鈴木 勉、浅野 奏、鈴木健夫
    • Total Pages
      5
    • Publisher
      公益社団法人 日本薬学会
    • Related Report
      2014 Annual Research Report
  • [Remarks] RNAの化学修飾が遺伝暗号を変える

    • URL

      https://www.u-tokyo.ac.jp/ja/utokyo-research/research-news/chemical-modification-in-RNA-changes-genetic-code.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 変則暗号の成立に寄与する新規のtRNA修飾の発見

    • URL

      http://first.lifesciencedb.jp/archives/16978

    • Related Report
      2017 Annual Research Report
  • [Remarks] 2018 Breakthrough Articles from NAR

    • Related Report
      2017 Annual Research Report
  • [Remarks] 転移RNAの成熟を助ける意外な方法 出芽酵母のtRNA前駆体はキャップ修飾により安定化されている

    • URL

      https://www.u-tokyo.ac.jp/ja/utokyo-research/research-news/unexpected-modification-to-support-maturation-of-transfer-RNA.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] tRNA前駆体は5’キャップ構造により安定化されている

    • URL

      http://first.lifesciencedb.jp/archives/12799

    • Related Report
      2016 Annual Research Report
  • [Remarks] 変則的な暗号を解読するためのはじめの一歩 ミトコンドリアゲノムの解読に必須なメチル化酵素を同定

    • URL

      https://www.u-tokyo.ac.jp/ja/utokyo-research/research-news/first-step-to-deciphering-a-non-universal-genetic-code.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 変則的な遺伝暗号の解読をつかさどるf5C修飾はNSUN3によるメチル化からはじまる

    • URL

      http://first.lifesciencedb.jp/archives/12537

    • Related Report
      2016 Annual Research Report
  • [Remarks] 鈴木研究室

    • URL

      http://rna.chem.t.u-tokyo.ac.jp/index.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-06-05   Modified: 2022-04-28  

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