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Molecular Science of NO Dyanmics in Biological System

Research Project

Project/Area Number 26220807
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Bio-related chemistry
Research InstitutionUniversity of Hyogo (2016-2018)
Institute of Physical and Chemical Research (2014-2015)

Principal Investigator

Shiro Yoshitsugu  兵庫県立大学, 生命理学研究科, 教授 (70183051)

Co-Investigator(Kenkyū-buntansha) 澤井 仁美  兵庫県立大学, 生命理学研究科, 助教 (50584851)
杉田 有治  国立研究開発法人理化学研究所, 開拓研究本部, 主任研究員 (80311190)
Research Collaborator SUGIMOTO Hiroshi  
TOSHA Takehiko  
NAKAMURA Hiro  
HISANO Tamao  
KUBO Minoru  
YAGI Kiyoshi  
Project Period (FY) 2014-05-30 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥195,130,000 (Direct Cost: ¥150,100,000、Indirect Cost: ¥45,030,000)
Fiscal Year 2018: ¥27,300,000 (Direct Cost: ¥21,000,000、Indirect Cost: ¥6,300,000)
Fiscal Year 2017: ¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Fiscal Year 2016: ¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Fiscal Year 2015: ¥70,200,000 (Direct Cost: ¥54,000,000、Indirect Cost: ¥16,200,000)
Fiscal Year 2014: ¥44,850,000 (Direct Cost: ¥34,500,000、Indirect Cost: ¥10,350,000)
Keywords一酸化窒素 / 脱窒 / 一酸化窒素還元酵素 / 呼吸酵素 / 金属酵素 / 膜タンパク質 / 酵素反応 / 温室効果ガス / 分子進化 / 窒素循環 / 環境科学
Outline of Final Research Achievements

Denitirification is a kind of anaerobic respiration of microorganism, in which nitrate and nitrite are converted into N2 through intermediate formation of cytotoxic nitric oxide NO (NO3-→NO2-→NO→N2O→N2). In this study, we have studied nitric oxide reductases NOR, a key enzyme of the denitrification, which detoxifies NO as follows; 2NO + 2H+ + 2e- → N2O + H2O. We newly found that NOR, NO decomposing enzyme, makes a complex with the NO-generating enzyme, nitrite reductase for the rapid NO detoxification without diffusing NO into the cell. We characterized the catalytic reaction with the time-resolved techniques, and proposed the molecular mechanism of the NO detoxification by NOR. These proposals allowed us to discuss the molecular evolution of respiratory enzymes from anaerobic to aerobic system. We also characterized the structural and functional changes of NORs of pathogens upon inhibitor binding.

Academic Significance and Societal Importance of the Research Achievements

脱窒は地球上の窒素循環において重要な生物学的プロセスであり、その際に生成する亜酸化窒素(N2O)は温室効果ガスならびにオゾン層破壊ガスであり、その生成の約7割は、NOR反応(2NO + 2H+ + 2e- → N2O + H2O)による。この観点から、NORによるN2O産生の分子科学研究の成果は重要である(環境化学)。NORは生物の呼吸の祖先型酵素であり、酸素を使わない呼吸(嫌気呼吸)から酸素を使った呼吸(好気呼吸)への分子進化への手がかりを得た(基礎生物学)。病原菌もその感染増殖に活用する為にNORを有することから、その阻害剤開発の基礎データを得た(医科学)。

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A-: Progress in the research is steadily towards the initial goal. However, further efforts are necessary as a part of the research progress is delayed.

Report

(10 results)
  • 2019 Research Progress Assessment (Verification Result) ( PDF )
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Abstract ( PDF )   Annual Research Report
  • Research Products

    (66 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (7 results) Journal Article (33 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 33 results,  Open Access: 12 results,  Acknowledgement Compliant: 7 results) Presentation (17 results) (of which Int'l Joint Research: 12 results,  Invited: 17 results) Book (4 results) Remarks (5 results)

  • [Int'l Joint Research] リバプール大学(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] ストックホルム大学(スウェーデン)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] リバプール大学(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ストックホルム大学(スウェーデン)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Liverpool(英国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Stockholm University(スウェーデン)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Liverpool(英国)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Pseudomonas aeruginosa overexpression system of nitric oxide reductase for in vivo and in vitro mutational analyses2018

    • Author(s)
      Yamagiwa Raika、Kurahashi Takuya、Takeda Mariko、Adachi Mayuho、Nakamura Hiro、Arai Hiroyuki、Shiro Yoshitsugu、Sawai Hitomi、Tosha Takehiko
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1859 Issue: 5 Pages: 333-341

    • DOI

      10.1016/j.bbabio.2018.02.009

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstitution of Full-Length P450BM3 with an Artificial Metal Complex by Utilising the Transpeptidase Sortase A2018

    • Author(s)
      K. Omura, Y. Aiba, H. Onoda, J. K. Stanfield, S. Ariyasu, H. Sugimoto, Y. Shiro, O. Shoji, Y. Watanabe
    • Journal Title

      Chem. Commun.

      Volume: 54 Issue: 57 Pages: 7892-7895

    • DOI

      10.1039/c8cc02760a

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.2018

    • Author(s)
      Ganasen M, Togashi H, Takeda H, Asakura H, Tosha T, Yamashita K, Hirata K, Nariai Y, Urano T, Yuan X, Hamza I, Mauk AG, Shiro Y, Sugimoto H, Sawai H.
    • Journal Title

      Communications Biology

      Volume: 1 Issue: 1 Pages: 120-120

    • DOI

      10.1038/s42003-018-0121-8

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Surface-Enhanced Infrared Absorption Spectroscopy of Bacterial Nitric Oxide Reductase under Electrochemical Control Using Vibrational Probe of Carbon Monoxide2018

    • Author(s)
      M. Kato, S. Nakagawa, T. Tosha, Y. Shiro, Y. Masuda, K. Nakata, I. Yagi
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: 9 Issue: 17 Pages: 5196-5200

    • DOI

      10.1021/acs.jpclett.8b02581

    • NAID

      120006887743

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain2018

    • Author(s)
      Furukawa Yoshiaki、Lim Carolyn、Tosha Takehiko、Yoshida Koki、Hagai Tomoaki、Akiyama Shuji、Watanabe Shoji、Nakagome Kenta、Shiro Yoshitsugu
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 9 Pages: e0204355-e0204355

    • DOI

      10.1371/journal.pone.0204355

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of an Internal Cavity in the PhoQ Sensor Domain for PhoQ Activity and SafA-mediated Control2018

    • Author(s)
      K. Yoshitani, E. Ishii, K. Taniguchi, H. Sugimoto, Y. Shiro, H. Mori, Y. Akiyama, A. Kato, R. Utsumi, Y. Eguchi
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 83 Issue: 4 Pages: 684-694

    • DOI

      10.1080/09168451.2018.1562879

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanistic Insights into the Activation of Soluble Guanylate Cyclase by Carbon Monoxide: A Multi-Step Mechanism Proposed for the BAY 41-2272-Induced Formation of 5-Coordinate CO Heme2018

    • Author(s)
      Ryu Makino, Yuji Obata, Motonari Tsubaki, Tetsutaro Iizuka, Yuki Hamajima,Yasuyuki Kato-Yamada, Keisuke Mashima, and Yoshitsugu Shiro
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 10 Pages: 1620-1631

    • DOI

      10.1021/acs.biochem.7b01240

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of the Quinol-dependent Nitric Oxide Reductase from the Pathogen Neisseria meningitidis, an Electrogenic Enzyme2018

    • Author(s)
      N. Gonska, D. R. Young, R. Yuki, T. Okamoto, T. Hisano, S. V. Antonyuk, S. S. Hasnain, K. Muramoto, Y. Shiro, T. Tosha, P. Adelroth
    • Journal Title

      Sci. Rep.

      Volume: 8: 3637 Issue: 1 Pages: 3637-3637

    • DOI

      10.1038/s41598-018-21804-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Architecture of a Complete Two-Component Signal Transduction System: Oxygen-Sensing Proteins FixL, FixJ, and Their Complex2018

    • Author(s)
      G. S. A. Wright, A. Saeki, T. Hikima, Y. Nishizono, T. Hisano, M. Yamamoto, S. V. Antonyuk, S. S. Hasnain, Y. Shiro, H. Sawai
    • Journal Title

      Sci. Signal.

      Volume: 11 Issue: 525

    • DOI

      10.1126/scisignal.aaq0825

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Roles of N- and C-terminal domains in the ligand-binding properties of cytoglobin2018

    • Author(s)
      S. Hanai, H.i Tsujino, T. Yamashita, R. Torii, H. Sawai, Y. Shiro, K. Oohora, T. Hayashi, T. Uno
    • Journal Title

      J. Inorg. Biochem.

      Volume: 179 Pages: 1-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group2017

    • Author(s)
      Uehara Hiromu、Shisaka Yuma、Nishimura Tsubasa、Sugimoto Hiroshi、Shiro Yoshitsugu、Miyake Yoshihiro、Shinokubo Hiroshi、Watanabe Yoshihito、Shoji Osami
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 56 Issue: 48 Pages: 15279-15283

    • DOI

      10.1002/anie.201707212

    • NAID

      120006382255

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for binding and transfer of heme in bacterial heme-acquisition systems2017

    • Author(s)
      Naoe Youichi、Nakamura Nozomi、Rahman Md. Mahfuzur、Tosha Takehiko、Nagatoishi Satoru、Tsumoto Kouhei、Shiro Yoshitsugu、Sugimoto Hiroshi
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics

      Volume: 85 Issue: 12 Pages: 2217-2230

    • DOI

      10.1002/prot.25386

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate2017

    • Author(s)
      Tosha Takehiko、Kubo Minoru, et. al
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41467-017-01702-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules2017

    • Author(s)
      Suzuki Kazuto、Stanfield Joshua Kyle、Shoji Osami、Yanagisawa Sota、Sugimoto Hiroshi、Shiro Yoshitsugu、Watanabe Yoshihito
    • Journal Title

      Catalysis Science & Technology

      Volume: 7 Issue: 15 Pages: 3332-3338

    • DOI

      10.1039/c7cy01130j

    • NAID

      120006382270

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives2017

    • Author(s)
      Shoji Osami、Yanagisawa Sota、Stanfield Joshua Kyle、Suzuki Kazuto、Cong Zhiqi、Sugimoto Hiroshi、Shiro Yoshitsugu、Watanabe Yoshihito
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 56 Issue: 35 Pages: 10324-10329

    • DOI

      10.1002/anie.201703461

    • NAID

      120006382269

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamics of Nitric Oxide Controlled by Protein Complex in Bacterial System2017

    • Author(s)
      Erina Terasaka, Kenta Yamada, Po-Hung Wang, Kanta Hosokawa, Raika Yamagiwa, Kimi Matsumoto, Shoko Ishii, Takaharu Mori, Kiyoshi Yagi, Hitomi Sawai, Hiroyuki Arai, Hiroshi Sugimoto, Yuji Sugita, Yoshitsugu Shiro and Takehiko Tosha
    • Journal Title

      PNAS

      Volume: 114 Issue: 37 Pages: 9888-9893

    • DOI

      10.1073/pnas.1621301114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamics of Nitric Oxide Controlled by Protein Complex in Bacterial System2017

    • Author(s)
      E. Terasakaa, K. Yamada, P.-H. Wang, K. Hosokawa, R. Yamagiwa, K. Matsumoto, S. Ishii, T. Mori, K. Yagi, H. Sawai, H. Arai, H. Sugimotoa, Y. Sugitac, Y. Shiroa, T. Tosha
    • Journal Title

      Proc. Natl. Acd. SCI. USA

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Crystal structure of bacterial haem importer complex in the inward-facing conformation2016

    • Author(s)
      Naoe, Y., Nakamura, N., Doi, A., Sawabe, M., Nakamura, H., Shiro, Y., Sugimoto, H.
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 13411-13411

    • DOI

      10.1038/ncomms13411

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A Study of the Dynamics of the Heme Pocket and C-helix in CooA Upon CO Dissociation Using Time-resolved Visible and UV Resonance Raman Spectroscopy2016

    • Author(s)
      Akihiro Otomo, Haruto Ishikawa, Misao Mizuno, Tetsunari Kimura, Minoru Kubo, Yoshitsugu Shiro, Shigetoshi Aono, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. B

      Volume: 120 Issue: 32 Pages: 7836-7843

    • DOI

      10.1021/acs.jpcb.6b05634

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulatory Implications of Structural Changes in Tyr201 of the Oxygen Sensor Protein FixL2016

    • Author(s)
      Takeo Yamawaki, Haruto Ishikawa, Misao Mizuno, Hiro Nakamura, Yoshitsugu Shiro, and Yasuhisa Mizutani
    • Journal Title

      Biochemistry

      Volume: 55 Issue: 29 Pages: 4027-4035

    • DOI

      10.1021/acs.biochem.6b00405

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Substrate-Binding-State Mimic of H2O2-Dependent Cytochrome P450 Produced by One-point Mutagenesis and Peroxygenation of Non-native Substrates2016

    • Author(s)
      O. Shoji, T. Fujishiro, K. Nishio, Y. Kano, H. Kimoto, S. Chien, H. Onoda, A. Muramatsu, S. Tanaka, A. Hori, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      Catal. Sci. Tech.

      Volume: 6 Issue: 15 Pages: 5806-5811

    • DOI

      10.1039/c6cy00630b

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A Nearly On-axis Spectroscopic System for Simultaneously Measuring UV-visible Absorption and X-ray Diffraction in the SPring-8 Structural Genomics Beamline2016

    • Author(s)
      M. Sakaguchi, T. Kimura, T. Nishida, T. Tosha, Y. Yamaguchi, S. Yanagisawa, G. Ueno, H. Murakami, H. Ago, M. Yamamoto, T. Ogura, Y. Shiro, M. Kubo
    • Journal Title

      J. Synchro. Rad.

      Volume: 23 Issue: 1 Pages: 334-338

    • DOI

      10.1107/s1600577515018275

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The Initial O2 Inserting Step of Tryptophan Dioxygenase Reaction Proposed by a Heme-Modification Study2015

    • Author(s)
      R. Makino, E. Obayashi, H. Hori, T. Iizuka, K. Mashima, Y. Shiro, Y. Ishimura
    • Journal Title

      Biochemistry

      Volume: 54 Issue: 23 Pages: 3604-3616

    • DOI

      10.1021/acs.biochem.5b00048

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal Structure of Response Regulator ChrA in the Heme-Sensing Two-Component System of Corynebacterium diphtheriae2015

    • Author(s)
      A. Doi, H. Nakamura, Y. Shiro, H. Sugimoto
    • Journal Title

      Acta Crysll. F

      Volume: 71 Issue: 8 Pages: 966-971

    • DOI

      10.1107/s2053230x15009838

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Contribution of the Distal Pocket Residue to the Acyl-chain-length Substrate Specificity of (R)-specific Enoyl-CoA Hydratases from Pseudomonas: Site-directed Mutagenesis, Chimeragenesis, X-ray Crystallographic Analysis, and Homology Modeling2015

    • Author(s)
      T. Tsuge, S. Sato, A. Hiroe, K. Ishizuka, H. Kanazawa, Y. Shiro, T. Hisano
    • Journal Title

      Appl. Environm. Microbio.

      Volume: 81 Issue: 23 Pages: 8076-8083

    • DOI

      10.1128/aem.02412-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal Structure, Exogenous Ligand Binding and Redox Properties of an Engineered Diiron Active Site in a Bacterial Hemerythrin2014

    • Author(s)
      A. Onoda, Y. Okamoto, H. Sugimoto, Y. Takano, S. Hirota, D. Kurtz, Y. Shiro, T. Hayashi
    • Journal Title

      Chem. Comm.

      Volume: 50 Pages: 3421-3423

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures of Reduced and Ligand-Bound Nitric Oxide Reductase Provide Insights into Functional Differences in Respiratory Enzymes2014

    • Author(s)
      N. Sato, S. Ishii, H. Sugimoto, T. Hino, Y. Fukumori, Y. Sako, Y. Shiro, T. Tosha
    • Journal Title

      PROTEINS: Structure, Function, and Bioinformatics

      Volume: 82 Pages: 1258-1271

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An in vivo Inhibitory Effect on the Heme Uptake of Pseudomonas aeruginosa by Its Hemophore (HasAp) Carrying Synthetic Metal Complexes2014

    • Author(s)
      C. Shirataki, O. Shoji, M. Terada, S. Ozaki, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      Angw. Chem. Int. Ed.

      Volume: 53 Pages: 2862-2866

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of Quinol-Dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus: Enzymatic Activity and Active Site Structure2014

    • Author(s)
      E. Terasaka, N. Okada, N. Sato, Y. Sako, Y. Shiro, T. Tosha
    • Journal Title

      Biochim. Biophys. Acta - Bioenergetics

      Volume: 1837 Pages: 1019-1026

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disulfide Bonds Regulate Binding of Exogenous Ligand to Human Cytoglobin2014

    • Author(s)
      H. Tsujino, T. Yamashita, A. Nose, K. Kukino, H. Sawai, Y. Shiro, T. Uno
    • Journal Title

      J. Inor. Biochem.

      Volume: 135 Pages: 20-27

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Palladium-Nanoparticle-Catalyzed 1,7-Palladium Migration Involving C-H Activation, Followed by Intramolecular Amination: Regioselective Synthesis of N1-Arylbenzotriazoles and an Evaluation of Their Inhibitory Activity Towards Indoleamine 2,3-Dioxygenase2014

    • Author(s)
      K. Takagi, M. Al-Amin, N. Hoshiya, J. Wouters, H. Sugimoto, Y. Shiro, H. Fukuda, S. Shuto, M. Arisawa
    • Journal Title

      J. Org. Chem.

      Volume: 79 Pages: 6366-6371

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activation of Wild-type Cytochrome P450BM3 by the Next Generation of Decoy Molecules: Enhanced Hydroxylation of Gaseous Alkanes and Crystallographic Evidence2014

    • Author(s)
      Z. Cong, O. Shoji, C. Kasai, N. Kawakami, H. Sugimoto, Y. Shiro, Y. Watanabe
    • Journal Title

      ACS Catalysis

      Volume: 5 Pages: 150-156

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure-function Analyses of Cytochrome P450revI Involved in Reveromycin A Biosynthesis and Evaluation of the Biological Activity of Its Aubstrate, Reveromycin T2014

    • Author(s)
      S. Takahashi, S. Nagano, T. Nogawa, N. Kanoh, M. Uramoto, M. Kawatani, T. Shimizu, T. Miyazawa, Y. Shiro, H. Osada
    • Journal Title

      J. Biol. Chem.

      Volume: 289 Pages: 32446-32458

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Coordination and Electronic Structures of Short-Lived Intermediate of Heme-Containing NO Reductases2018

    • Author(s)
      Shiro, Y.
    • Organizer
      233rd ECS Meeting, Seattle, USA
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Coordination and Electronic Structures of Short-Lived Intermediate in Heme-Containing NO Reductases2018

    • Author(s)
      Shiro, Y.
    • Organizer
      Chemistry and Biology of Tetrapyrroles” Gordon Research Conference, Newport, USA
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of Sort-Lived Reaction Intermediates of Nitric Oxide Reductases by Time-Resolved Techniques2018

    • Author(s)
      Takeda, H., Nomura T., Tosha, T., Sugimoto, H., Kubo, M., Shiro, Y.
    • Organizer
      9th Asian Biological Inorganic Chemistry (AsBIC-9), Natl. Univ. Singapore
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of Coordination and Electronic Structures of Intermediates Appeared in NO Reduction by NO Reductases2018

    • Author(s)
      Shiro, Y.
    • Organizer
      5th Ringberg Workshop on Structural Biology with FELs
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural Basis for Molecular Mechanism of Bacterial Nitric Oxide Reductases2017

    • Author(s)
      Shiro, Y.
    • Organizer
      IGER Intl. Symp. Physics of Life
    • Place of Presentation
      名大、ES Hall、名古屋
    • Year and Date
      2017-03-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] NO Dynamics in Biology: Its Generation and Decomposition2016

    • Author(s)
      Shiro, Y.
    • Organizer
      Royal Society Meeting Inorganic Chemistry
    • Place of Presentation
      阪大、銀杏会館、豊中
    • Year and Date
      2016-10-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Damage-free X-ray Crystallographic Analysis of P450nor in the NO Bound Form using SACLA.2016

    • Author(s)
      Kubo, M., Nomura, T., Nishida, T., Tosha, T., Sugimoto, H., Kimura, T., Takano, Y., Yamashita, K., Hirata, K., Ueno, G., Ago, H., Yamamoto, M., Shiro, Y.
    • Organizer
      British Biophysical Society 2016 Biennial Meeting
    • Place of Presentation
      Liverpool, UK
    • Year and Date
      2016-07-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Molecular Mechanism of NO Reduction by Bacterial Nitric Oxide Reductases2016

    • Author(s)
      Shiro, Y.
    • Organizer
      ICCP9
    • Place of Presentation
      Nanjing, China
    • Year and Date
      2016-06-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular Mechanism of NO Reduction by Bacterial Nitric Oxide Reductases2016

    • Author(s)
      Shiro, Y.
    • Organizer
      229th ECS Meeting
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2016-05-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Proton Transfer in Bacterial Nitric Oxide Reductases Coupled with NO Reduction2015

    • Author(s)
      Y. Shiro
    • Organizer
      PACIFICHEM2015 The International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular Mechanism of NO Reduction by Bacterial Nitric Oxide Reductases”2015

    • Author(s)
      Y. Shiro
    • Organizer
      PACIFICHEM2015 The International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of Nitric Oxide in Bacterial Cellular System2015

    • Author(s)
      Y. Shiro
    • Organizer
      “Cell Biology of Metals” Gordon Research Conference
    • Place of Presentation
      West Dover, VT, USA
    • Year and Date
      2015-07-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular Mechanism of NO Decomposition by Nitric Oxide Reductases2015

    • Author(s)
      Y. Shiro
    • Organizer
      ICBIC17 17th International Conference of Biological Inorganic Chemistry
    • Place of Presentation
      Beijin, China
    • Year and Date
      2015-07-20
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Generation, Channeling and Decomposition of NO in Bacterial System2015

    • Author(s)
      Shiro, Y.
    • Organizer
      “Metals in Biology” Gordon Research Conference
    • Place of Presentation
      Ventura, USA
    • Year and Date
      2015-01-25 – 2015-01-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] これからの生物無機化学 ー金属タンパク質の過去と未来ー2014

    • Author(s)
      城 宜嗣
    • Organizer
      第87回日本生化学会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Generation, Propagation and Decomposition of Nitric Oxide in Bacterial Denitrification2014

    • Author(s)
      Shiro, Y.
    • Organizer
      18th European Bioenergetics Conference (EBEC 2014)
    • Place of Presentation
      Lisbon, Portugal
    • Year and Date
      2014-07-12 – 2014-07-17
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Bacterial Nitrite Reductase and Nitric Oxide Reductase; NO Generation, Channeling and Decomposition2014

    • Author(s)
      Shiro, Y.
    • Organizer
      Eighth International Conference on Porphyrins and Phtalocyanines (ICPP8)
    • Place of Presentation
      Istanbul, Turky
    • Year and Date
      2014-06-22 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] RSC Metallobiology Series No. 13, Dioxygen-dependent Heme Enzymes2018

    • Author(s)
      T. Tosha, Y. Shiro
    • Total Pages
      375
    • Publisher
      The Royal Society of Chemistry
    • ISBN
      9781782629917
    • Related Report
      2018 Annual Research Report
  • [Book] Gas Sensing in Cells2017

    • Author(s)
      H. Sawai, Y. Shiro
    • Total Pages
      302
    • Publisher
      The Royal Society of Chemistry Metals in Biology
    • ISBN
      9781782628958
    • Related Report
      2017 Annual Research Report
  • [Book] Metalloenzymes in Denitrification2017

    • Author(s)
      T. Tosha, Y. Shiro
    • Total Pages
      452
    • Publisher
      Royal Society of Chemistry Metallobiology Series
    • Related Report
      2016 Annual Research Report
  • [Book] 鉄の事典2014

    • Author(s)
      藤井 浩、城 宜嗣
    • Total Pages
      820
    • Publisher
      朝倉書店
    • Related Report
      2014 Annual Research Report
  • [Remarks] 兵庫県立大 大学院生命理学研究科 細胞制御Ⅱ分野

    • URL

      http://www.sci.u-hyogo.ac.jp/life/regulation/index-j.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 理化学研究所 放射光科学研究センター (兵庫県立大学 連携講座「細胞膜超分子複合体機能解析学講座」)

    • URL

      http://www2.riken.jp/biometal/index.htm

    • Related Report
      2018 Annual Research Report
  • [Remarks] 兵庫県立大 大学院 生命理学研究科 細胞制御Ⅱ

    • URL

      http://www.sci.u-hyogo.ac.jp/life/regulation/index-j.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 理化学研究所 城生体金属科学研究室

    • URL

      http://www.riken.jp/biometal/index.htm

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 兵庫県立大学 脂肪制御Ⅱ研究室

    • URL

      http://www.sci.u-hyogo.ac.jp/life/regulation/index-j.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-06-05   Modified: 2022-04-28  

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