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Molecular mechanism of H3K9me-mediated transcriptional silencing

Research Project

Project/Area Number 26250039
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Genome biology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Shinkai Yoichi  国立研究開発法人理化学研究所, 眞貝細胞記憶研究室, 主任研究員 (20211972)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥40,300,000 (Direct Cost: ¥31,000,000、Indirect Cost: ¥9,300,000)
Fiscal Year 2016: ¥11,700,000 (Direct Cost: ¥9,000,000、Indirect Cost: ¥2,700,000)
Fiscal Year 2015: ¥13,650,000 (Direct Cost: ¥10,500,000、Indirect Cost: ¥3,150,000)
Fiscal Year 2014: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
KeywordsCRISPR/Cas9 / レトロエレメント / 転写抑制 / SETDB1 / 網羅的KOスクリーニング / H3K9メチル化 / ES細胞 / 発現制御 / エピジェネティクス / 遺伝子ノックアウト / クロマチン / 内在性レトロウイルス / CRISPR-Cas9 / スクリーニング / ノックアウト / ノックダウン
Outline of Final Research Achievements

The Moloney murine leukemia virus (MLV)-based retroviral vector MSCV-GFP, which is repressed by the histone H3 lysine 9 methyltranferase SETDB1 pathway in mESCs was used as a reporter provirus, we performed a genome-wide CRISPR screen to advance our understanding of retroelement silencing in mESCs. We identified more than 80 genes involved in this process including not only already known retroelement silencing genes but also multiple novel ones. Among the characterized novel factors, we find that they seem to work for silencing in different layers, thus upstream and parallel or downstream of SETDB1.

Report

(4 results)
  • 2017 Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (11 results)

All 2018 2017 2016 2015 Other

All Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 2 results) Presentation (7 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] A CRISPR knockout screen Identifies SETDB1-target retroelement silencing factors in embryonic stem cells2018

    • Author(s)
      Fukuda Kei、Okuda Akihiko、Yusa Kosuke、Shinkai Yoichi
    • Journal Title

      Genome Research

      Volume: 28 Issue: 6 Pages: 1-13

    • DOI

      10.1101/gr.227280.117

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A somatic role for the histone methyltransferase Setdb1 in endogenous retrovirus silencing2018

    • Author(s)
      Kato Masaki、Takemoto Keiko、Shinkai Yoichi
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 1-13

    • DOI

      10.1038/s41467-018-04132-9

    • NAID

      120006466661

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Methylation of DNA Ligase 1 by G9a/GLP Recruits UHRF1 to Replicating DNA and Regulates DNA Methylation2017

    • Author(s)
      Ferry L、Fournier A、Tsusaka T、Adelmant G、Shimazu T、Matano S、Kirsh O、Amouroux R、Dohmae N、Suzuki T、Filion GJ、Deng W、de Dieuleveult M、Fritsch L、Kudithipudi S、Jeltsch A、Leonhardt H、Hajkova P、Marto JA、Arita K、Shinkai Y、Defossez P-A
    • Journal Title

      Molecular Cell

      Volume: 67 Issue: 4 Pages: 550-565

    • DOI

      10.1016/j.molcel.2017.07.012

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Epigenetic regulation of transposable element2017

    • Author(s)
      Shinkai Y.
    • Organizer
      熊本大学リエゾンラボ研究会/リーディングプログラム:HIGOプログラム最先端研究セミナー
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Role and regulation of histone lysine-9 methylation2017

    • Author(s)
      Shinkai Y.
    • Organizer
      Japan-France EPIGENETICS WORKSHOP 2017
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Atf7ipによる外来性および内在性レトロウイルス抑制機構の解析2017

    • Author(s)
      加藤雅紀
    • Organizer
      生命科学系学会合同年次大会2017
    • Related Report
      2016 Annual Research Report
  • [Presentation] A CRISPR Knockout Screen Identifies Provirus Silencing Factors in Embryonic Stem Cells2017

    • Author(s)
      福田渓
    • Organizer
      第11回エピジェネティクス研究会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR-Cas9システムを用いた内在性ウイルス抑制因子の網羅的同定2016

    • Author(s)
      福田渓
    • Organizer
      日本遺伝学会第88回大会
    • Related Report
      2016 Annual Research Report
  • [Presentation] Epigenetic regulation of transposable element2015

    • Author(s)
      眞貝洋一、福田渓、遊佐宏介
    • Organizer
      国際高等研究所研究プロジェクト「クロマチン・デコーディング」2015年度第1 回研究会
    • Place of Presentation
      国際高等研究所(京都府木津川市、日本)
    • Year and Date
      2015-12-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Epigenetic regulation of transposable element2015

    • Author(s)
      Yoichi Shinkai, Kei Fukuda and Yusuke Yusa
    • Organizer
      Conference on Transposition and Genome Engineering 2015
    • Place of Presentation
      奈良春日野国際フォーラム 甍~I・RA・KA~ (奈良市、日本)
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks]

    • URL

      http://shinkai.riken.jp/

    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2019-03-29  

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