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Identification of genes involved in agronomical QTLs by novel methods

Research Project

Project/Area Number 26252001
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Science in genetics and breeding
Research InstitutionNagoya University

Principal Investigator

MATSUOKA Makoto  名古屋大学, 生物機能開発利用研究センター, 教授 (00270992)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥38,220,000 (Direct Cost: ¥29,400,000、Indirect Cost: ¥8,820,000)
Fiscal Year 2016: ¥12,610,000 (Direct Cost: ¥9,700,000、Indirect Cost: ¥2,910,000)
Fiscal Year 2015: ¥12,610,000 (Direct Cost: ¥9,700,000、Indirect Cost: ¥2,910,000)
Fiscal Year 2014: ¥13,000,000 (Direct Cost: ¥10,000,000、Indirect Cost: ¥3,000,000)
Keywords育種学 / 遺伝学 / 遺伝子 / 植物
Outline of Final Research Achievements

The purpose of this study was establishment of a novel tool(s) to easily identify genes involved in formation of the rice panicle, which is one of the most important traits determining the crop yield. For this purpose, we used the information of conventional panicle structural data, such as panicle length, primary rachis blanch number/length, and secondary rachis blanch number/length, and also new information about the expression level of all rice genes in the panicle meristems, to perform the QTL analysis based on panicle structural and expression traits. By combining these two QTL data, we could easily identify some good candidates for genes involved in panicle formation. We also performed a genome wide association study (GWAS) for such purpose and also succeeded to identify a few novel genes for panicle development. Based on these observations, we discussed the feasibility of new tools to easily identify novel genes involved in rice panicle formation.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (12 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Small Organ Size 1 and Small Organ Size 2/Dwarf and Low Tillering form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.2017

    • Author(s)
      Hirano, K.
    • Journal Title

      Mol Plant.

      Volume: n/a Issue: 4 Pages: 590-604

    • DOI

      10.1016/j.molp.2016.12.013

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Increasing resistant starch content in rice for better consumer health.2016

    • Author(s)
      Ordonio, RL.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: n/a Issue: 45 Pages: 12616-12618

    • DOI

      10.1073/pnas.1616053113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of a Novel Lodging Resistance QTL Gene Involved in Strigolactone Signaling and Its Pyramiding with a QTL Gene Involved in Another Mechanism2015

    • Author(s)
      Kenji Yano, Taiichiro Ookawa, Koichiro Aya, Yusuke Ochiai, Tadashi Hirasawa, Takeshi Ebitani, Takeshi Takarada, Masahiro Yano, Toshio Yamamoto, Shuichi Fukuoka, Jianzhong Wu, Tsuyu Ando, Reynante Lacsamana Ordonio, Ko Hirano and Makoto Matsuoka
    • Journal Title

      Molecular Plant

      Volume: 8 Issue: 2 Pages: 303-314

    • DOI

      10.1016/j.molp.2014.10.009

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Comprehensive gene expression analysis of rice aleurone cells: probing the existence of an alternative gibberellin receptor2015

    • Author(s)
      Kenji Yano, Koichiro Aya, Ko Hirano, Reynante Laesamana Ordonio, Miyako Ueguchi- Tanaka, Makoto Matsuoka
    • Journal Title

      Plant Physiology

      Volume: 167 Issue: 2 Pages: 531-544

    • DOI

      10.1104/pp.114.247940

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] GWAS解析を用いたイネカルスの再分化率に関与する候補遺伝子の同定.2017

    • Author(s)
      矢野憲司
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋市
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] イネの穂形質に関するGWAS解析.2017

    • Author(s)
      小竹久仁彦
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋市
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] イネカルスの再分化能関連遺伝子の解析.2017

    • Author(s)
      西村明日香
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋市
    • Year and Date
      2017-03-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] Genome-wide association studies of agronomic traits in Japanese japonica rice.2016

    • Author(s)
      Yano, K.
    • Organizer
      Workshop of Genetic Basis and Breeding Application on High-yield Superior Quality Rice.
    • Place of Presentation
      Beijing
    • Year and Date
      2016-10-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DELLA, IDD and SCL3 cooperate in the gibberellin feedback system.2016

    • Author(s)
      Yoshida, H.
    • Organizer
      22nd IPGSA
    • Place of Presentation
      Tronto
    • Year and Date
      2016-06-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 複雑なゲノム構造がもたらすGWA解析の偽陽性2016

    • Author(s)
      矢野憲司
    • Organizer
      日本育種学会第129回講演会
    • Place of Presentation
      横浜
    • Year and Date
      2016-03-22
    • Related Report
      2015 Annual Research Report
  • [Presentation] GWA解析を用いたイネ農業関連遺伝子の単離2016

    • Author(s)
      竹内秀征
    • Organizer
      日本育種学会第129回講演会
    • Place of Presentation
      横浜
    • Year and Date
      2016-03-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] 日本のイネ品種を用いたGWAS解析2015

    • Author(s)
      矢野憲司
    • Organizer
      日本育種学会第127回講演会
    • Place of Presentation
      東京
    • Year and Date
      2015-03-20 – 2015-03-22
    • Related Report
      2014 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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